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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10 [BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins2704019293626435248.sh + '[' tiff = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61986_merge_ci -v /uod/idr/repos/curated/tiff:/data -v /uod/idr-scratch/merge-ci/curated/tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:28:55,629 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:28:55,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 06:28:55,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:28:55,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:28:55,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:28:55,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:28:55,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:28:55,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:28:55,633 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:28:55,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:28:55,633 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:28:55,634 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:28:55,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:28:55,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:28:55,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:28:55,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:28:55,895 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:28:55,895 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:28:55,895 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:28:55,896 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:28:55,896 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 06:28:55,896 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 06:28:55,897 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 06:28:55,906] [main] java.version = 1.8.0_342 [testng] 06:28:55,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:28:55,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:28:55,954 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_06-28-55.log] [testng] 06:28:55,955 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 06:28:55,957] [main] testng.directory = /data [testng] [2025-03-28 06:28:55,957] [main] testng.configDirectory = /config [testng] [2025-03-28 06:28:55,970] [main] testng.multiplier = 1.0 [testng] [2025-03-28 06:28:55,970] [main] testng.in-memory = false [testng] [2025-03-28 06:28:55,970] [main] testng.allow-missing = false [testng] [2025-03-28 06:28:55,970] [main] user.language = en [testng] [2025-03-28 06:28:55,970] [main] user.country = ${user.country} [testng] [2025-03-28 06:28:55,970] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 06:32:49,020] [main] ---------------------------------------- [testng] [2025-03-28 06:32:49,020] [main] Total files: 4426 [testng] [2025-03-28 06:32:49,021] [main] Scan time: 233.05 s (52 ms/file) [testng] [2025-03-28 06:32:49,021] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 722 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 10:22:16,132] [pool-1-thread-1] Initializing /data/josiah/cell-Z22.C1.tiff: [testng] 10:22:16,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:22:16,133 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:16,134 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_10-22-16.log] [testng] 10:22:16,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f577d75 - End of configuration. [testng] [2025-03-28 10:22:31,707] [pool-1-thread-12] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs014.TIF: [testng] 10:22:31,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:22:31,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:31,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-28_10-22-31.log] [testng] 10:22:31,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36cf05bb - End of configuration. [testng] [2025-03-28 10:22:46,240] [pool-1-thread-11] Initializing /data/lzw/Cholinergic.tif: [testng] 10:22:46,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:22:46,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:46,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_10-22-46.log] [testng] 10:22:46,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22465c31 - End of configuration. [testng] [2025-03-28 10:23:02,173] [pool-1-thread-10] Initializing /data/zstd-compressed/beads.tif: [testng] 10:23:02,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:23:02,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:23:02,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-28_10-23-02.log] [testng] 10:23:02,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@143dcaa0 - End of configuration. [testng] [2025-03-28 10:23:18,252] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C1_Z014.tif: [testng] 10:23:18,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:23:18,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:23:18,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_10-23-18.log] [testng] 10:23:18,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19b9a3ff - End of configuration. [testng] [2025-03-28 10:23:34,382] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C0_Z001.tif: [testng] 10:23:34,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:23:34,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:23:34,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_10-23-34.log] [testng] 10:23:34,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427fbe3b - End of configuration. [testng] [2025-03-28 10:23:53,559] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0228.TIF: [testng] 10:23:53,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:23:53,559 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:23:53,560 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_10-23-53.log] [testng] 10:23:53,560 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f5cffc0 - End of configuration. [testng] [2025-03-28 10:24:11,399] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z020.tif: [testng] 10:24:11,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:24:11,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:24:11,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_10-24-11.log] [testng] 10:24:11,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38a96a99 - End of configuration. [testng] [2025-03-28 10:24:27,163] [pool-1-thread-5] Initializing /data/tamjid/10_para-stage 1.tiff: [testng] 10:24:27,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:24:27,164 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:24:27,164 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_10-24-27.log] [testng] 10:24:27,164 |-INFO in ch.qos.logback.core.sift.SiftProcessor@624af3aa - End of configuration. [testng] [2025-03-28 10:24:44,633] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z027.tif: [testng] 10:24:44,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:24:44,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:24:44,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_10-24-44.log] [testng] 10:24:44,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1efa16fa - End of configuration. [testng] [2025-03-28 10:25:03,169] [pool-1-thread-3] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x16.tiff: [testng] 10:25:03,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:25:03,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:03,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_10-25-03.log] [testng] 10:25:03,170 |-INFO in ch.qos.logback.core.sift.SiftProcessor@465cda40 - End of configuration. [testng] [2025-03-28 10:25:20,849] [pool-1-thread-2] Initializing /data/paulh/quickpollen4_w3_t1.tif: [testng] 10:25:20,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:25:20,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:25:20,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_10-25-20.log] [testng] 10:25:20,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bdca974 - End of configuration. [testng] [2025-03-28 10:27:20,397] [pool-1-thread-3] Initializing /data/misc/ms-paint.png: [testng] [2025-03-28 10:27:20,998] [pool-1-thread-5] Initializing /data/public/cellprofiler/fruit-fly-cells/POS218.pattern/POS218.pattern: [testng] [2025-03-28 10:28:44,987] [pool-1-thread-6] Initializing /data/brian/PlantCell/PlantCell_C0_Z010.tif: [testng] [2025-03-28 10:29:03,182] [pool-1-thread-4] Initializing /data/josh/jnb1s1_raw0215.TIF: [testng] [2025-03-28 10:29:27,263] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-01.tiff: [testng] [2025-03-28 10:29:46,312] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z024.tif: [testng] [2025-03-28 10:30:04,387] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs012.TIF: [testng] [2025-03-28 10:30:19,350] [pool-1-thread-10] Initializing /data/josh/NESb_C2_TP10.tiff: [testng] [2025-03-28 10:30:39,629] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z029.tif: [testng] [2025-03-28 10:30:57,073] [pool-1-thread-7] Initializing /data/chris/GFP + Vav2 actin 3b.tif: [testng] [2025-03-28 10:31:15,328] [pool-1-thread-2] Initializing /data/josiah/cell-Z0.C1.tiff: [testng] [2025-03-28 10:31:33,684] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z020.tif: [testng] [2025-03-28 10:32:03,932] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs004.TIF: [testng] [2025-03-28 10:33:47,032] [pool-1-thread-11] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs010.TIF: [testng] [2025-03-28 10:34:07,696] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z061.tif: [testng] [2025-03-28 10:34:25,518] [pool-1-thread-1] Initializing /data/qa-17411/_t20270.tif: [testng] [2025-03-28 10:34:46,422] [pool-1-thread-2] Initializing /data/brian/datamanager.tiff: [testng] [2025-03-28 10:35:08,884] [pool-1-thread-12] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-32x48.tiff: [testng] [2025-03-28 10:35:33,539] [pool-1-thread-8] Initializing /data/josiah/cell-Z30.C0.tiff: [testng] [2025-03-28 10:35:56,798] [pool-1-thread-7] Initializing /data/jae/Rat_Hippocampal_Neuron.tif: [testng] [2025-03-28 10:36:16,075] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x16.tiff: [testng] [2025-03-28 10:36:38,839] [pool-1-thread-10] Initializing /data/victoria/scan4_1hr_20X_.352g_n180p_2z_0.387644res_9int_C2_TP1.tiff: [testng] [2025-03-28 10:36:50,567] [pool-1-thread-9] Initializing /data/paul-van-schayck/myfile.tif: [testng] [2025-03-28 10:37:11,175] [pool-1-thread-3] Initializing /data/public/condensation/C4.pattern3.tif: [testng] [2025-03-28 10:38:55,904] [pool-1-thread-10] Initializing /data/brian/PlantCell/PlantCell_C1_Z012.tif: [testng] [2025-03-28 10:39:30,740] [pool-1-thread-6] Initializing /data/ascb/CYT-29_BaintonGlycogenAB_4800.tif: [testng] [2025-03-28 10:39:46,982] [pool-1-thread-11] Initializing /data/jayne/Zst_76/WTZER_Series76_z000_ch00.tif: [testng] [2025-03-28 10:40:09,253] [pool-1-thread-2] Initializing /data/carolyn/tumor_2.tif: [testng] [2025-03-28 10:40:28,214] [pool-1-thread-8] Initializing /data/josiah/cell-Z5.C1.tiff: [testng] [2025-03-28 10:40:47,173] [pool-1-thread-4] Initializing /data/curtis/blastocyste.tif: [testng] [2025-03-28 10:41:07,389] [pool-1-thread-9] Initializing /data/ascb/CYT-23_BaintonGlycogenB_4800.tif: [testng] [2025-03-28 10:41:25,700] [pool-1-thread-7] Initializing /data/josh/jnb1s1_raw0244.TIF: [testng] [2025-03-28 10:41:47,586] [pool-1-thread-12] Initializing /data/bgriffen/Image_XY01_00557_Z001_CH1.tif: [testng] [2025-03-28 10:42:07,025] [pool-1-thread-1] Initializing /data/brian/PlantCell/PlantCell_C0_Z005.tif: [testng] [2025-03-28 10:42:29,456] [pool-1-thread-3] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs017.TIF: [testng] [2025-03-28 10:44:48,016] [pool-1-thread-10] Initializing /data/lee/r03c03f01p01rc2-ch1sk1fk1fl1.tiff: [testng] [2025-03-28 10:45:16,956] [pool-1-thread-6] Initializing /data/josh/jnb1s1_raw0258.TIF: [testng] [2025-03-28 10:45:35,740] [pool-1-thread-8] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-strips-60.tiff: [testng] [2025-03-28 10:45:55,914] [pool-1-thread-1] Initializing /data/josh/jnb1s1_raw0237.TIF: [testng] [2025-03-28 10:46:15,040] [pool-1-thread-9] Initializing /data/brian/insight.tiff: [testng] [2025-03-28 10:46:33,957] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z012.tif: [testng] [2025-03-28 10:46:52,426] [pool-1-thread-7] Initializing /data/wayne/apple.tif: [testng] [2025-03-28 10:47:10,614] [pool-1-thread-3] Initializing /data/josh/jnb1s1_raw0231.TIF: [testng] [2025-03-28 10:47:29,808] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z043.tif: [testng] [2025-03-28 10:47:51,020] [pool-1-thread-2] Initializing 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16:58:15,025] [pool-1-thread-11] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x16.tiff: [testng] [2025-03-28 16:58:35,241] [pool-1-thread-10] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-48x64.tiff: [testng] [2025-03-28 16:58:51,612] [pool-1-thread-7] Initializing /data/imagesc-82872/WT_Uninfected_top_right.tiff: [testng] [2025-03-28 16:59:09,065] [pool-1-thread-5] Initializing /data/glen/742015a20x3middle16bit.tif: [testng] [2025-03-28 16:59:33,355] [pool-1-thread-2] Initializing /data/josiah/cell-Z38.C1.tiff: [testng] [2025-03-28 16:59:55,537] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z012.tif: [testng] [2025-03-28 17:00:15,996] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-chunky-tiles-64x64.tiff: [testng] [2025-03-28 17:01:28,694] [pool-1-thread-1] Initializing /data/public/condensation/C4.pattern.tif: [testng] [2025-03-28 17:02:21,863] [pool-1-thread-9] Initializing /data/brian/retina/retina_C0_Z010.tif: [testng] [2025-03-28 17:02:49,770] [pool-1-thread-8] Initializing /data/kevino/_BF_00000.tif: [testng] [2025-03-28 17:03:17,091] [pool-1-thread-10] Initializing /data/john/C100915-MA_AXIS_LEH_IMAGE_KIND_FLAT_ICE_3.tif: [testng] [2025-03-28 17:03:48,737] [pool-1-thread-11] Initializing /data/chris-lesiak/half-float.tiff: [testng] [2025-03-28 17:04:15,242] [pool-1-thread-3] Initializing /data/julien/MarjorieCoisy1.TIF: [testng] [2025-03-28 17:04:39,488] [pool-1-thread-7] Initializing /data/josiah/cell-Z11.C0.tiff: [testng] [2025-03-28 17:05:02,559] [pool-1-thread-12] Initializing /data/kelsey/Live-Dead Assay 4000 nm pitch PU.TIF: [testng] [2025-03-28 17:05:32,299] [pool-1-thread-5] Initializing /data/marc/ball48_LOCI_RGB_autoscale_10x.tif: [testng] [2025-03-28 17:05:50,548] [pool-1-thread-6] Initializing /data/christine/Image5D_4color test stack/test stack.tif: [testng] [2025-03-28 17:06:08,202] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z059.tif: [testng] [2025-03-28 17:06:24,186] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z006.tif: [testng] [2025-03-28 17:07:43,968] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z038.tif: [testng] [2025-03-28 17:08:02,189] [pool-1-thread-2] Initializing /data/brian/Alx-488-pk.tif: [testng] [2025-03-28 17:08:17,074] [pool-1-thread-4] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x48.tiff: [testng] [2025-03-28 17:08:31,633] [pool-1-thread-9] Initializing /data/unknown/epsImgColony.tif: [testng] [2025-03-28 17:08:45,045] [pool-1-thread-11] Initializing /data/brian/retina/retina_C1_Z033.tif: [testng] [2025-03-28 17:08:59,788] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z020.tif: [testng] [2025-03-28 17:09:13,062] [pool-1-thread-5] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-48x48.tiff: [testng] [2025-03-28 17:09:25,468] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C1_Z008.tif: [testng] [2025-03-28 17:09:43,696] [pool-1-thread-10] Initializing /data/qa-20514/819_2.tif: [testng] [2025-03-28 17:10:03,242] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-strips-05.tiff: [testng] [2025-03-28 17:10:22,564] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0211.TIF: [testng] [2025-03-28 17:10:41,142] [pool-1-thread-7] Initializing /data/josiah/cell-Z10.C0.tiff: [testng] [2025-03-28 17:12:13,850] [pool-1-thread-1] Initializing /data/public/condensation/B12.pattern5.tif: [testng] [2025-03-28 17:13:00,361] [pool-1-thread-8] Initializing /data/imagesc-82872/SG11410002_253174651388_S001.tif: [testng] [2025-03-28 17:13:33,307] [pool-1-thread-10] Initializing /data/public/condensation/A1.pattern1.tif: [testng] [2025-03-28 17:14:14,362] [pool-1-thread-6] Initializing /data/josiah/cell-Z22.C0.tiff: [testng] [2025-03-28 17:14:42,351] [pool-1-thread-3] Initializing /data/glen/6307wmmidb4237m_cmle.tif: [testng] [2025-03-28 17:15:13,566] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z057.tif: [testng] [2025-03-28 17:15:42,386] [pool-1-thread-5] Initializing /data/josiah/cell-Z10.C1.tiff: [testng] [2025-03-28 17:16:01,411] [pool-1-thread-9] Initializing /data/josh/jnb1s1_raw0242.TIF: [testng] [2025-03-28 17:16:32,868] [pool-1-thread-12] Initializing /data/josiah/cell-Z16.C1.tiff: [testng] [2025-03-28 17:17:14,770] [pool-1-thread-11] Initializing /data/damian/damian.tif: [testng] [2025-03-28 17:18:00,512] [pool-1-thread-7] Initializing /data/kevino/_BF_00005.tif: [testng] [2025-03-28 17:18:35,577] [pool-1-thread-2] Initializing /data/brian/retina/retina_C0_Z056.tif: [testng] [2025-03-28 17:21:47,034] [pool-1-thread-1] Initializing /data/wayne/Rockies-grayscale.tif: [testng] [2025-03-28 17:23:21,177] [pool-1-thread-12] Initializing /data/josh/jnb1s1_raw0205.TIF: [testng] [2025-03-28 17:24:07,550] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z021.tif: [testng] [2025-03-28 17:24:56,843] [pool-1-thread-7] Initializing /data/qa-5004/ID4118_21_uncuff_10x_HE.tif: [testng] [2025-03-28 17:25:34,372] [pool-1-thread-3] Initializing /data/brian/retina/retina_C0_Z049.tif: [testng] [2025-03-28 17:26:15,949] [pool-1-thread-9] Initializing /data/brian/PlantCell/PlantCell_C0_Z024.tif: [testng] [2025-03-28 17:26:57,383] [pool-1-thread-11] Initializing /data/brian/retina/retina_C0_Z026.tif: [testng] [2025-03-28 17:27:33,410] [pool-1-thread-4] Initializing /data/josiah/cell-Z26.C0.tiff: [testng] [2025-03-28 17:28:19,330] [pool-1-thread-2] Initializing /data/josh/jnb1s1_raw0221.TIF: [testng] [2025-03-28 17:29:02,967] [pool-1-thread-5] Initializing /data/ascb/CYT-43_HowellAcinarUnlabeled_4800.tif: [testng] [2025-03-28 17:30:42,981] [pool-1-thread-6] Initializing /data/brian/retina/retina_C1_Z035.tif: [testng] [2025-03-28 17:33:21,987] [pool-1-thread-8] Initializing /data/josh/NESb_C2_TP8.tiff: [testng] [2025-03-28 17:39:24,336] [pool-1-thread-1] Initializing /data/josiah/cell-Z36.C1.tiff: [testng] [2025-03-28 17:43:55,011] [pool-1-thread-7] Initializing /data/brian/retina/retina_C0_Z046.tif: [testng] [2025-03-28 17:47:07,696] [pool-1-thread-12] Initializing /data/tom-kazimiers/crop_two_chan.tiff: [testng] [2025-03-28 17:49:01,163] [pool-1-thread-11] Initializing /data/stephane/d02&007.tif: [testng] [2025-03-28 17:52:18,741] [pool-1-thread-6] Initializing /data/samples/tiling-variants/data-layout-64x64-planar-tiles-16x32.tiff: [testng] [2025-03-28 17:55:46,944] [pool-1-thread-3] Initializing /data/misc/mri-stack.tif: [testng] [2025-03-28 17:58:13,519] [pool-1-thread-2] Initializing /data/michael/WonkyTrafficLight.tiff: [testng] [2025-03-28 18:01:22,742] [pool-1-thread-10] Initializing /data/public/condensation/A5.pattern1.tif: [testng] [2025-03-28 18:04:45,648] [pool-1-thread-4] Initializing /data/brian/PlantCell/PlantCell_C1_Z024.tif: [testng] [2025-03-28 18:07:30,906] [pool-1-thread-9] Initializing /data/julien/AVECCHRO.TIF: [testng] [2025-03-28 18:09:38,212] [pool-1-thread-5] Initializing /data/tom/TLD - n000000_Stamp.tif: [testng] [2025-03-28 18:11:31,935] [pool-1-thread-8] Initializing /data/brian/retina/retina_C0_Z052.tif: [testng] [2025-03-28 18:19:15,703] [pool-1-thread-1] Initializing /data/brian/retina/retina_C1_Z006.tif: [testng] [2025-03-28 18:20:37,665] [pool-1-thread-7] Initializing /data/marc/ball48_original_10x.tif: [testng] [2025-03-28 18:21:16,411] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z015.tif: [testng] [2025-03-28 18:24:16,217] [pool-1-thread-8] Initializing /data/jay/10-crop-Stack.tif: [testng] [2025-03-28 18:25:44,801] [pool-1-thread-10] Initializing /data/public/condensation/B12.pattern1.tif: [testng] [2025-03-28 18:27:14,196] [pool-1-thread-5] Initializing /data/sub-resolution/Leica-1/Leica-1-subifds.tiff: [testng] [2025-03-28 18:28:44,007] [pool-1-thread-3] Initializing /data/brian/retina/retina_C1_Z031.tif: [testng] [2025-03-28 18:30:07,446] [pool-1-thread-6] Initializing /data/stephane/test sortie_t0000_z0000.tif: [testng] [2025-03-28 18:31:51,606] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z013.tif: [testng] [2025-03-28 18:34:10,077] [pool-1-thread-2] Initializing /data/public/libtiff/cramps.tif: [testng] [2025-03-28 18:36:45,367] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z047.tif: [testng] [2025-03-28 18:39:52,727] [pool-1-thread-11] Initializing /data/brian/PlantCell/PlantCell_C0_Z034.tif: [testng] [2025-03-28 18:46:06,276] [pool-1-thread-7] Initializing /data/josiah/cell-Z1.C1.tiff: [testng] [2025-03-28 18:53:31,139] [pool-1-thread-1] Initializing /data/brian/061124MitogreenDIV3Cell2-1 copy.tif: [testng] [2025-03-28 19:00:07,235] [pool-1-thread-9] Initializing /data/jae/first image.tif: [testng] [2025-03-28 19:05:36,566] [pool-1-thread-6] Initializing /data/josiah/cell-Z1.C0.tiff: [testng] [2025-03-28 19:09:37,996] [pool-1-thread-3] Initializing /data/brian/PlantCell/PlantCell_C0_Z025.tif: [testng] [2025-03-28 19:13:01,599] [pool-1-thread-12] Initializing /data/brian/retina/retina_C0_Z000.tif: [testng] [2025-03-28 19:16:20,776] [pool-1-thread-4] Initializing /data/brian/retina/retina_C0_Z018.tif: [testng] [2025-03-28 19:18:19,017] [pool-1-thread-8] Initializing /data/brian/PlantCell/PlantCell_C1_Z016.tif: [testng] [2025-03-28 19:20:08,945] [pool-1-thread-5] Initializing /data/josiah/cell-Z4.C0.tiff: [testng] [2025-03-28 19:21:41,531] [pool-1-thread-11] Initializing /data/josiah/cell-Z3.C0.tiff: [testng] [2025-03-28 19:23:21,370] [pool-1-thread-2] Initializing /data/brian/retina/retina_C1_Z042.tif: [testng] [2025-03-28 19:25:54,783] [pool-1-thread-10] Initializing /data/brian/retina/retina_C1_Z010.tif: [testng] [2025-03-28 19:28:51,517] [pool-1-thread-7] Initializing /data/chris-wood/15ms full low light.tif: [testng] [2025-03-28 19:33:02,401] [pool-1-thread-1] Initializing /data/josiah/cell-Z37.C0.tiff: [testng] [2025-03-28 19:36:28,090] [pool-1-thread-9] Initializing /data/alla/deconvolve6/deconvolve6_Pseudo_Tl000_Zs013.TIF: [testng] [2025-03-28 19:39:15,593] [pool-1-thread-6] Initializing /data/qa-7589/CalGrid.tif: [testng] [2025-03-28 19:40:59,390] [pool-1-thread-11] Initializing /data/tamjid/Image_843.tif: [testng] [2025-03-28 19:43:02,261] [pool-1-thread-12] Initializing /data/ascb/FND-11_PorterPaladeEarly_4800.tif: [testng] [2025-03-28 19:44:57,021] [pool-1-thread-8] Initializing /data/jerome/e346_plt1(m)_F1-6.tif: [testng] [2025-03-28 19:46:39,420] [pool-1-thread-10] Initializing /data/josh/jnb1s1_raw0222.TIF: [testng] [2025-03-28 19:48:42,836] [pool-1-thread-5] Initializing /data/brian/retina/retina_C1_Z040.tif: [testng] [2025-03-28 19:51:26,768] [pool-1-thread-3] Initializing /data/damian/33m.tiff: [testng] [2025-03-28 19:53:15,747] [pool-1-thread-2] Initializing /data/brian/PlantCell/PlantCell_C0_Z030.tif: [testng] [2025-03-28 19:54:57,582] [pool-1-thread-4] Initializing /data/brian/retina/retina_C1_Z027.tif: [testng] [2025-03-28 19:58:43,181] [pool-1-thread-7] Initializing /data/josiah/cell-Z31.C0.tiff: [testng] [2025-03-28 20:10:54,173] [pool-1-thread-1] Initializing /data/jacques/20110629-Spat-1_1.tif: [testng] [2025-03-28 20:18:55,084] [pool-1-thread-6] Initializing /data/carolyn/tumor_3.tif: [testng] [2025-03-28 20:24:07,742] [pool-1-thread-9] Initializing /data/brian/retina/retina_C1_Z045.tif: [testng] [2025-03-28 20:27:44,857] [pool-1-thread-10] Initializing /data/pavel/Dmel/spim.pattern: [testng] 21:35:12,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 21:35:12,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:12,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_21-35-12.log] [testng] 21:35:12,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23be5b31 - End of configuration. [testng] 21:35:12,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 21:35:12,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:12,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_21-35-12.log] [testng] 21:35:12,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1beafb9b - End of configuration. [testng] 21:35:12,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 21:35:12,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:12,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-28_21-35-12.log] [testng] 21:35:12,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f179834 - End of configuration. [testng] 21:35:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 21:35:12,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:35:12,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_21-35-12.log] [testng] 21:35:12,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f409142 - End of configuration. [testng] 21:36:20,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 21:36:20,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:36:20,181 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_21-36-20.log] [testng] 21:36:20,181 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fc4ab54 - End of configuration. [testng] 21:36:20,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 21:36:20,673 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:36:20,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_21-36-20.log] [testng] 21:36:20,674 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3709befd - End of configuration. [testng] 21:36:21,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 21:36:21,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:36:21,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_21-36-21.log] [testng] 21:36:21,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58edda17 - End of configuration. [testng] 00:54:32,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:54:32,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,475 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-29_00-54-32.log] [testng] 00:54:32,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39821f5d - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 38266, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1105 minutes 43 seconds Finished: SUCCESS