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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@13 [BIOFORMATS-test-folder@13] $ /bin/bash -xe /tmp/jenkins9745379008053962455.sh + '[' hitachi = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61990_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 06:29:10,628 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:29:10,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 06:29:10,630 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:29:10,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:29:10,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:29:10,631 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:29:10,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:29:10,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:29:10,632 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:29:10,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:29:10,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:29:10,632 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:29:10,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:29:10,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:29:10,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:29:10,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:29:10,893 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:29:10,894 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:29:10,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:29:10,894 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:29:10,894 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 06:29:10,895 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 06:29:10,895 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 06:29:10,905] [main] java.version = 1.8.0_342 [testng] 06:29:10,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:29:10,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:29:10,958 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_06-29-10.log] [testng] 06:29:10,963 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 06:29:10,965] [main] testng.directory = /data [testng] [2025-03-28 06:29:10,965] [main] testng.configDirectory = /config [testng] [2025-03-28 06:29:10,977] [main] testng.multiplier = 1.0 [testng] [2025-03-28 06:29:10,977] [main] testng.in-memory = false [testng] [2025-03-28 06:29:10,978] [main] testng.allow-missing = false [testng] [2025-03-28 06:29:10,978] [main] user.language = en [testng] [2025-03-28 06:29:10,978] [main] user.country = ${user.country} [testng] [2025-03-28 06:29:10,978] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 06:31:08,532] [main] ---------------------------------------- [testng] [2025-03-28 06:31:08,532] [main] Total files: 21 [testng] [2025-03-28 06:31:08,532] [main] Scan time: 117.554 s (5597 ms/file) [testng] [2025-03-28 06:31:08,532] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 06:35:48,407] [pool-1-thread-1] Initializing /data/stefan/001_q10.txt: [testng] 06:35:48,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:35:48,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:35:48,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_06-35-48.log] [testng] 06:35:48,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f2db932 - End of configuration. [testng] [2025-03-28 06:36:13,024] [pool-1-thread-12] Initializing /data/stefan/001_q11.txt: [testng] 06:36:13,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:36:13,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:36:13,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-28_06-36-13.log] [testng] 06:36:13,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51b8e774 - End of configuration. [testng] [2025-03-28 06:36:42,462] [pool-1-thread-11] Initializing /data/stefan/001_q04.txt: [testng] 06:36:42,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:36:42,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:36:42,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_06-36-42.log] [testng] 06:36:42,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@593406b3 - End of configuration. [testng] [2025-03-28 06:36:54,829] [pool-1-thread-10] Initializing /data/stefan/001_q15.txt: [testng] 06:36:54,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:36:54,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:36:54,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-28_06-36-54.log] [testng] 06:36:54,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b685b20 - End of configuration. [testng] [2025-03-28 06:37:12,382] [pool-1-thread-9] Initializing /data/stefan/001_q05.txt: [testng] 06:37:12,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:37:12,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:12,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_06-37-12.log] [testng] 06:37:12,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@290b59ba - End of configuration. [testng] [2025-03-28 06:37:28,670] [pool-1-thread-8] Initializing /data/stefan/001_q09.txt: [testng] 06:37:28,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:37:28,671 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:28,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_06-37-28.log] [testng] 06:37:28,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b89756 - End of configuration. [testng] [2025-03-28 06:37:52,635] [pool-1-thread-7] Initializing /data/stefan/001_q06.txt: [testng] 06:37:52,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:37:52,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:37:52,636 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_06-37-52.log] [testng] 06:37:52,636 |-INFO in ch.qos.logback.core.sift.SiftProcessor@313b4f46 - End of configuration. [testng] [2025-03-28 06:38:05,511] [pool-1-thread-6] Initializing /data/stefan/001_q03.txt: [testng] 06:38:05,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:38:05,512 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:05,512 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_06-38-05.log] [testng] 06:38:05,513 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49f54c68 - End of configuration. [testng] [2025-03-28 06:38:19,942] [pool-1-thread-5] Initializing /data/stefan/001_q08.txt: [testng] 06:38:19,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:38:19,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:19,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_06-38-19.log] [testng] 06:38:19,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e38e3db - End of configuration. [testng] [2025-03-28 06:38:38,580] [pool-1-thread-4] Initializing /data/stefan/001_q01.txt: [testng] 06:38:38,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:38:38,580 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:38,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_06-38-38.log] [testng] 06:38:38,581 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76575e40 - End of configuration. [testng] [2025-03-28 06:38:46,776] [pool-1-thread-3] Initializing /data/stefan/001_q16.txt: [testng] 06:38:46,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:38:46,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:46,777 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_06-38-46.log] [testng] 06:38:46,777 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43ab6d9b - End of configuration. [testng] [2025-03-28 06:38:53,991] [pool-1-thread-2] Initializing /data/stefan/001_q14.txt: [testng] 06:38:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:38:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:38:53,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_06-38-53.log] [testng] 06:38:53,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8e03c11 - End of configuration. [testng] [2025-03-28 06:41:08,653] [pool-1-thread-6] Initializing /data/stefan/001_q17.txt: [testng] [2025-03-28 06:41:15,642] [pool-1-thread-11] Initializing /data/stefan/001_q18.txt: [testng] [2025-03-28 06:41:20,798] [pool-1-thread-4] Initializing /data/stefan/001_q13.txt: [testng] [2025-03-28 06:41:26,087] [pool-1-thread-2] Initializing /data/stefan/001_q12.txt: [testng] [2025-03-28 06:41:39,705] [pool-1-thread-7] Initializing /data/stefan/001_q07.txt: [testng] [2025-03-28 06:41:56,271] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 minutes 24 seconds Finished: SUCCESS