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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins17405234547856423807.sh + '[' picoquant = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62044_merge_ci -v /uod/idr/repos/curated/picoquant:/data -v /uod/idr-scratch/merge-ci/curated/picoquant:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:41:47,370 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 07:41:47,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 07:41:47,372 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:41:47,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:41:47,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:41:47,373 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:41:47,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:41:47,373 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:41:47,374 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:41:47,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:41:47,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:41:47,374 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:41:47,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:41:47,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:41:47,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:41:47,622 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:41:47,629 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:41:47,630 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:41:47,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:41:47,630 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:41:47,630 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 07:41:47,631 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 07:41:47,631 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 257 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 07:41:47,641] [main] java.version = 1.8.0_342 [testng] 07:41:47,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:41:47,644 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:41:47,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_07-41-47.log] [testng] 07:41:47,690 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 07:41:47,692] [main] testng.directory = /data [testng] [2025-03-28 07:41:47,692] [main] testng.configDirectory = /config [testng] [2025-03-28 07:41:47,704] [main] testng.multiplier = 1.0 [testng] [2025-03-28 07:41:47,705] [main] testng.in-memory = false [testng] [2025-03-28 07:41:47,705] [main] testng.allow-missing = false [testng] [2025-03-28 07:41:47,705] [main] user.language = en [testng] [2025-03-28 07:41:47,705] [main] user.country = ${user.country} [testng] [2025-03-28 07:41:47,705] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 07:42:18,624] [main] ---------------------------------------- [testng] [2025-03-28 07:42:18,624] [main] Total files: 8 [testng] [2025-03-28 07:42:18,624] [main] Scan time: 30.919 s (3864 ms/file) [testng] [2025-03-28 07:42:18,624] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 8 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 07:42:58,480] [pool-1-thread-1] Initializing /data/qa-9505/GFP_and_mRFP_FRET.bin: [testng] 07:42:58,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:42:58,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:42:58,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_07-42-58.log] [testng] 07:42:58,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69eb48af - End of configuration. [testng] [2025-03-28 07:43:05,248] [pool-1-thread-8] Initializing /data/qa-17095/IRF_256.bin: [testng] 07:43:05,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:43:05,249 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:05,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_07-43-05.log] [testng] 07:43:05,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e67bdd0 - End of configuration. [testng] [2025-03-28 07:43:11,686] [pool-1-thread-7] Initializing /data/neil/PollenGrainsSymPhoTime.png: [testng] 07:43:11,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:43:11,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:11,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_07-43-11.log] [testng] 07:43:11,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28a7c1a9 - End of configuration. [testng] [2025-03-28 07:43:12,064] [pool-1-thread-6] Initializing /data/qa-17134/VLDLR_mGFP_with_ligand.bin: [testng] 07:43:12,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:43:12,065 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:12,065 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_07-43-12.log] [testng] 07:43:12,066 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27949bae - End of configuration. [testng] [2025-03-28 07:43:18,613] [pool-1-thread-5] Initializing /data/qa-9434/DaisyPollen.bin: [testng] 07:43:18,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:43:18,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:18,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_07-43-18.log] [testng] 07:43:18,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70068fe2 - End of configuration. [testng] [2025-03-28 07:43:25,837] [pool-1-thread-4] Initializing /data/neil/PollenGrains.bin: [testng] 07:43:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:43:25,838 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:25,839 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_07-43-25.log] [testng] 07:43:25,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59149c41 - End of configuration. [testng] [2025-03-28 07:43:33,038] [pool-1-thread-3] Initializing /data/neil/PollenGrains.bmp: [testng] 07:43:33,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:43:33,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:33,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_07-43-33.log] [testng] 07:43:33,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1fc117 - End of configuration. [testng] [2025-03-28 07:43:34,696] [pool-1-thread-2] Initializing /data/qa-9505/CENP-labelled_cells_for_FRET.bin: [testng] 07:43:34,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:43:34,696 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:43:34,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_07-43-34.log] [testng] 07:43:34,697 |-INFO in ch.qos.logback.core.sift.SiftProcessor@507eb1c0 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 424, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 42 seconds Finished: SUCCESS