Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins184932808200014656.sh + '[' leo = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62092_merge_ci -v /uod/idr/repos/curated/leo:/data -v /uod/idr-scratch/merge-ci/curated/leo:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 11:58:34,954 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 11:58:34,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 11:58:34,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:58:34,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 11:58:34,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 11:58:34,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 11:58:34,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 11:58:34,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:58:34,958 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 11:58:34,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 11:58:34,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 11:58:34,959 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 11:58:35,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 11:58:35,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 11:58:35,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 11:58:35,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 11:58:35,211 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 11:58:35,211 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 11:58:35,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 11:58:35,212 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 11:58:35,212 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 11:58:35,213 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 11:58:35,213 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 11:58:35,222] [main] java.version = 1.8.0_342 [testng] 11:58:35,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:58:35,226 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:58:35,269 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_11-58-35.log] [testng] 11:58:35,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 11:58:35,272] [main] testng.directory = /data [testng] [2025-03-28 11:58:35,272] [main] testng.configDirectory = /config [testng] [2025-03-28 11:58:35,284] [main] testng.multiplier = 1.0 [testng] [2025-03-28 11:58:35,284] [main] testng.in-memory = false [testng] [2025-03-28 11:58:35,284] [main] testng.allow-missing = false [testng] [2025-03-28 11:58:35,284] [main] user.language = en [testng] [2025-03-28 11:58:35,284] [main] user.country = ${user.country} [testng] [2025-03-28 11:58:35,285] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 11:59:02,503] [main] ---------------------------------------- [testng] [2025-03-28 11:59:02,504] [main] Total files: 10 [testng] [2025-03-28 11:59:02,504] [main] Scan time: 27.218 s (2721 ms/file) [testng] [2025-03-28 11:59:02,504] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 9 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 12:01:02,824] [pool-1-thread-1] Initializing /data/qa-16912/Zeiss_supra_SEM.tif: [testng] 12:01:02,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:01:02,824 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:02,825 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_12-01-02.log] [testng] 12:01:02,826 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aac5fc2 - End of configuration. [testng] [2025-03-28 12:01:16,378] [pool-1-thread-9] Initializing /data/public/dmankus/2160grating 3072.tif: [testng] 12:01:16,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:01:16,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:16,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_12-01-16.log] [testng] 12:01:16,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ec50c69 - End of configuration. [testng] [2025-03-28 12:01:28,632] [pool-1-thread-8] Initializing /data/misc/issue_image.tif: [testng] 12:01:28,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:01:28,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:28,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_12-01-28.log] [testng] 12:01:28,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@392bdf58 - End of configuration. [testng] [2025-03-28 12:01:39,017] [pool-1-thread-7] Initializing /data/steve/Ewald B/MHUSV02.SXM: [testng] 12:01:39,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:01:39,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:39,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_12-01-39.log] [testng] 12:01:39,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11f316a - End of configuration. [testng] [2025-03-28 12:01:46,007] [pool-1-thread-6] Initializing /data/public/dmankus/2160grating 1024.tif: [testng] 12:01:46,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:01:46,008 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:46,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_12-01-46.log] [testng] 12:01:46,008 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21d82990 - End of configuration. [testng] [2025-03-28 12:01:57,560] [pool-1-thread-5] Initializing /data/steve/Ewald B/LEO435_SEM.TIF: [testng] 12:01:57,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:01:57,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:01:57,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_12-01-57.log] [testng] 12:01:57,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565fea5b - End of configuration. [testng] [2025-03-28 12:02:06,511] [pool-1-thread-4] Initializing /data/qa-27408/Glc-1P+Cellob+CDP_72 h -04.tif: [testng] 12:02:06,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:02:06,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:02:06,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_12-02-06.log] [testng] 12:02:06,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f7a3d80 - End of configuration. [testng] [2025-03-28 12:02:16,100] [pool-1-thread-3] Initializing /data/public/dmankus/2160grating 512.tif: [testng] 12:02:16,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:02:16,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:02:16,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_12-02-16.log] [testng] 12:02:16,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22fb4d4 - End of configuration. [testng] [2025-03-28 12:02:25,313] [pool-1-thread-2] Initializing /data/pablo/sample.tif: [testng] 12:02:25,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:02:25,313 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:02:25,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_12-02-25.log] [testng] 12:02:25,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798f6826 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 477, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 57 seconds Finished: SUCCESS