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Started by upstream project "BIOFORMATS-test-repo" build number 393 originally caused by: Started by upstream project "Trigger" build number 418 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@17 [BIOFORMATS-test-folder@17] $ /bin/bash -xe /tmp/jenkins9482922363413589608.sh + '[' apng = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62101_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 12:55:22,900 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 12:55:22,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 12:55:22,902 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:55:22,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 12:55:22,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 12:55:22,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 12:55:22,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 12:55:22,903 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:55:22,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 12:55:22,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 12:55:22,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 12:55:22,904 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 12:55:23,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 12:55:23,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 12:55:23,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 12:55:23,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 12:55:23,173 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 12:55:23,173 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 12:55:23,173 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 12:55:23,174 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 12:55:23,174 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 12:55:23,175 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 12:55:23,175 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 271 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-28 12:55:23,188] [main] java.version = 1.8.0_342 [testng] 12:55:23,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:55:23,192 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:55:23,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-28_12-55-23.log] [testng] 12:55:23,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-28 12:55:23,241] [main] testng.directory = /data [testng] [2025-03-28 12:55:23,241] [main] testng.configDirectory = /config [testng] [2025-03-28 12:55:23,255] [main] testng.multiplier = 1.0 [testng] [2025-03-28 12:55:23,255] [main] testng.in-memory = false [testng] [2025-03-28 12:55:23,256] [main] testng.allow-missing = false [testng] [2025-03-28 12:55:23,256] [main] user.language = en [testng] [2025-03-28 12:55:23,256] [main] user.country = ${user.country} [testng] [2025-03-28 12:55:23,256] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-28 12:55:24,910] [main] ---------------------------------------- [testng] [2025-03-28 12:55:24,910] [main] Total files: 21 [testng] [2025-03-28 12:55:24,910] [main] Scan time: 1.654 s (78 ms/file) [testng] [2025-03-28 12:55:24,910] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-28 12:56:09,769] [pool-1-thread-1] Initializing /data/samples/Sun.png: [testng] 12:56:09,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 12:56:09,769 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:09,770 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-28_12-56-09.log] [testng] 12:56:09,770 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c840954 - End of configuration. [testng] [2025-03-28 12:56:10,454] [pool-1-thread-12] Initializing /data/samples/atom.png: [testng] 12:56:10,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 12:56:10,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:10,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-28_12-56-10.log] [testng] 12:56:10,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33a72d57 - End of configuration. [testng] [2025-03-28 12:56:11,236] [pool-1-thread-11] Initializing /data/samples/orbit.png: [testng] 12:56:11,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 12:56:11,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:11,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-28_12-56-11.log] [testng] 12:56:11,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ab1b8f - End of configuration. [testng] [2025-03-28 12:56:11,826] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png: [testng] 12:56:11,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 12:56:11,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:11,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-28_12-56-11.log] [testng] 12:56:11,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c7666d0 - End of configuration. [testng] [2025-03-28 12:56:12,465] [pool-1-thread-9] Initializing /data/qa-7473/x.png: [testng] 12:56:12,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:56:12,466 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:12,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-28_12-56-12.log] [testng] 12:56:12,466 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69e61573 - End of configuration. [testng] [2025-03-28 12:56:13,122] [pool-1-thread-8] Initializing /data/samples/william_wong04.png: [testng] 12:56:13,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 12:56:13,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:13,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-28_12-56-13.log] [testng] 12:56:13,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@100e27f1 - End of configuration. [testng] [2025-03-28 12:56:13,816] [pool-1-thread-7] Initializing /data/samples/daniel_coltri_two.png: [testng] 12:56:13,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 12:56:13,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:13,817 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-28_12-56-13.log] [testng] 12:56:13,817 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ccfd43f - End of configuration. [testng] [2025-03-28 12:56:14,593] [pool-1-thread-6] Initializing /data/qa-7473/n.tif: [testng] 12:56:14,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 12:56:14,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:14,594 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-28_12-56-14.log] [testng] 12:56:14,594 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a9f885 - End of configuration. [testng] [2025-03-28 12:56:41,832] [pool-1-thread-5] Initializing /data/samples/MoonPhases.png: [testng] 12:56:41,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:56:41,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:41,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-28_12-56-41.log] [testng] 12:56:41,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a441e3c - End of configuration. [testng] [2025-03-28 12:56:42,348] [pool-1-thread-4] Initializing /data/samples/joanna_viera01.png: [testng] 12:56:42,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 12:56:42,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:42,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-28_12-56-42.log] [testng] 12:56:42,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427f263e - End of configuration. [testng] [2025-03-28 12:56:43,183] [pool-1-thread-3] Initializing /data/samples/Matrix.png: [testng] 12:56:43,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:56:43,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:43,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-28_12-56-43.log] [testng] 12:56:43,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e46156f - End of configuration. [testng] [2025-03-28 12:56:43,823] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] 12:56:43,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:56:43,823 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:56:43,824 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-28_12-56-43.log] [testng] 12:56:43,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9c422 - End of configuration. [testng] [2025-03-28 12:57:05,354] [pool-1-thread-9] Initializing /data/samples/william_wong02.png: [testng] [2025-03-28 12:57:06,027] [pool-1-thread-7] Initializing /data/samples/spinfox.png: [testng] [2025-03-28 12:57:06,274] [pool-1-thread-4] Initializing /data/samples/william_wong01.png: [testng] [2025-03-28 12:57:06,782] [pool-1-thread-5] Initializing /data/samples/william_wong05.png: [testng] [2025-03-28 12:57:07,460] [pool-1-thread-2] Initializing /data/colin/test.sfstdge.png: [testng] [2025-03-28 12:57:08,182] [pool-1-thread-3] Initializing /data/samples/daniel_coltri_one.png: [testng] [2025-03-28 12:57:08,846] [pool-1-thread-12] Initializing /data/samples/PhugAnimation3.png: [testng] [2025-03-28 12:57:09,494] [pool-1-thread-8] Initializing /data/samples/chompy2.png: [testng] [2025-03-28 12:57:10,217] [pool-1-thread-11] Initializing /data/samples/StarV838.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 26 seconds Finished: SUCCESS