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Started by upstream project "BIOFORMATS-test-repo" build number 394 originally caused by: Started by upstream project "Trigger" build number 463 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins6613162927663372643.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62146_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:29:32,903 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:29:32,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:29:32,904 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:32,905 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:29:32,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:29:32,906 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:29:32,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:29:32,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:32,907 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:29:32,907 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:29:32,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:29:32,908 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:29:33,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:29:33,068 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:29:33,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:29:33,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:29:33,095 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:29:33,095 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:29:33,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:29:33,095 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:29:33,096 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:29:33,097 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:29:33,097 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-07 01:29:33,105] [main] java.version = 17.0.2 [testng] 01:29:33,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:29:33,108 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:33,147 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-07_01-29-33.log] [testng] 01:29:33,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-07 01:29:33,151] [main] testng.directory = /data [testng] [2025-05-07 01:29:33,151] [main] testng.configDirectory = /config [testng] [2025-05-07 01:29:33,159] [main] testng.multiplier = 1.0 [testng] [2025-05-07 01:29:33,160] [main] testng.in-memory = false [testng] [2025-05-07 01:29:33,160] [main] testng.allow-missing = false [testng] [2025-05-07 01:29:33,160] [main] user.language = en [testng] [2025-05-07 01:29:33,160] [main] user.country = ${user.country} [testng] [2025-05-07 01:29:33,160] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-07 01:29:35,465] [main] ---------------------------------------- [testng] [2025-05-07 01:29:35,465] [main] Total files: 21 [testng] [2025-05-07 01:29:35,465] [main] Scan time: 2.305 s (109 ms/file) [testng] [2025-05-07 01:29:35,465] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-07 01:29:48,886] [pool-1-thread-1] Initializing /data/venu/Kontrolle0014.lim: [testng] 01:29:48,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:48,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:48,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-07_01-29-48.log] [testng] 01:29:48,888 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7393297e - End of configuration. [testng] [2025-05-07 01:29:49,648] [pool-1-thread-12] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:29:49,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:49,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:49,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_01-29-49.log] [testng] 01:29:49,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@410bbfa4 - End of configuration. [testng] [2025-05-07 01:29:50,423] [pool-1-thread-11] Initializing /data/venu/Kontrolle0002.lim: [testng] 01:29:50,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:50,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:50,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_01-29-50.log] [testng] 01:29:50,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e8bbc0f - End of configuration. [testng] [2025-05-07 01:29:51,374] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:29:51,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:51,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:51,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_01-29-51.log] [testng] 01:29:51,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b053870 - End of configuration. [testng] [2025-05-07 01:29:52,056] [pool-1-thread-9] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:29:52,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:52,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:52,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_01-29-52.log] [testng] 01:29:52,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@132f6115 - End of configuration. [testng] [2025-05-07 01:29:52,628] [pool-1-thread-8] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:29:52,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:52,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:52,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_01-29-52.log] [testng] 01:29:52,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50dce3e2 - End of configuration. [testng] [2025-05-07 01:29:53,440] [pool-1-thread-7] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:29:53,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:53,441 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:53,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-07_01-29-53.log] [testng] 01:29:53,442 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d94135c - End of configuration. [testng] [2025-05-07 01:29:53,991] [pool-1-thread-6] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:29:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:53,991 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:53,992 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_01-29-53.log] [testng] 01:29:53,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62d50912 - End of configuration. [testng] [2025-05-07 01:29:54,737] [pool-1-thread-5] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:29:54,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:54,737 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:54,738 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_01-29-54.log] [testng] 01:29:54,738 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b0dea99 - End of configuration. [testng] [2025-05-07 01:29:55,379] [pool-1-thread-4] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:29:55,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:55,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:55,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_01-29-55.log] [testng] 01:29:55,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41304422 - End of configuration. [testng] [2025-05-07 01:29:56,126] [pool-1-thread-3] Initializing /data/venu/Kontrolle0021.lim: [testng] 01:29:56,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:56,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:56,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_01-29-56.log] [testng] 01:29:56,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48af7181 - End of configuration. [testng] [2025-05-07 01:29:56,763] [pool-1-thread-2] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:29:56,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:56,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:56,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_01-29-56.log] [testng] 01:29:56,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71ef81a5 - End of configuration. [testng] [2025-05-07 01:30:07,611] [pool-1-thread-5] Initializing /data/venu/Kontrolle0011.lim: [testng] [2025-05-07 01:30:08,310] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim: [testng] [2025-05-07 01:30:09,220] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim: [testng] [2025-05-07 01:30:10,012] [pool-1-thread-11] Initializing /data/venu/Kontrolle0018.lim: [testng] [2025-05-07 01:30:10,881] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] [2025-05-07 01:30:11,516] [pool-1-thread-7] Initializing /data/venu/Kontrolle0010.lim: [testng] [2025-05-07 01:30:12,546] [pool-1-thread-12] Initializing /data/venu/Kontrolle0004.lim: [testng] [2025-05-07 01:30:13,126] [pool-1-thread-4] Initializing /data/venu/Kontrolle0012.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 54 seconds Finished: SUCCESS