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Started by upstream project "BIOFORMATS-test-repo" build number 394 originally caused by: Started by upstream project "Trigger" build number 463 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@13 [BIOFORMATS-test-folder@13] $ /bin/bash -xe /tmp/jenkins13472476708020992485.sh + '[' pict = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62182_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:51:00,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:51:00,022 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:51:00,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:00,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:00,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:51:00,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:51:00,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:51:00,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:00,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:00,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:51:00,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:51:00,028 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:51:00,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:51:00,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:51:00,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:51:00,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:51:00,236 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:51:00,236 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:51:00,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:51:00,236 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:51:00,237 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:51:00,237 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:51:00,237 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-07 01:51:00,247] [main] java.version = 17.0.2 [testng] 01:51:00,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:51:00,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:00,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-07_01-51-00.log] [testng] 01:51:00,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-07 01:51:00,297] [main] testng.directory = /data [testng] [2025-05-07 01:51:00,297] [main] testng.configDirectory = /config [testng] [2025-05-07 01:51:00,305] [main] testng.multiplier = 1.0 [testng] [2025-05-07 01:51:00,306] [main] testng.in-memory = false [testng] [2025-05-07 01:51:00,307] [main] testng.allow-missing = false [testng] [2025-05-07 01:51:00,307] [main] user.language = en [testng] [2025-05-07 01:51:00,307] [main] user.country = ${user.country} [testng] [2025-05-07 01:51:00,307] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-07 01:51:02,598] [main] ---------------------------------------- [testng] [2025-05-07 01:51:02,598] [main] Total files: 25 [testng] [2025-05-07 01:51:02,598] [main] Scan time: 2.291 s (91 ms/file) [testng] [2025-05-07 01:51:02,599] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-07 01:51:32,194] [pool-1-thread-1] Initializing /data/misc/planet.pict: [testng] 01:51:32,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:51:32,195 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:32,196 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-07_01-51-32.log] [testng] 01:51:32,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d36a8cc - End of configuration. [testng] [2025-05-07 01:51:33,333] [pool-1-thread-12] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:51:33,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:51:33,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:33,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_01-51-33.log] [testng] 01:51:33,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2175c67f - End of configuration. [testng] [2025-05-07 01:51:34,669] [pool-1-thread-11] Initializing /data/jqd/mire32.pict: [testng] 01:51:34,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:51:34,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:34,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_01-51-34.log] [testng] 01:51:34,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60dfd808 - End of configuration. [testng] [2025-05-07 01:51:35,670] [pool-1-thread-10] Initializing /data/misc/planet2.pict: [testng] 01:51:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:51:35,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:35,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_01-51-35.log] [testng] 01:51:35,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f0ae6d7 - End of configuration. [testng] [2025-05-07 01:51:36,905] [pool-1-thread-9] Initializing /data/brian/images/WHT.PCT: [testng] 01:51:36,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:51:36,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:36,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_01-51-36.log] [testng] 01:51:36,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b63066f - End of configuration. [testng] [2025-05-07 01:51:37,854] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] 01:51:37,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:51:37,854 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:37,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_01-51-37.log] [testng] 01:51:37,855 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f1590e - End of configuration. [testng] [2025-05-07 01:51:38,461] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: [testng] 01:51:38,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:51:38,461 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:38,462 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-07_01-51-38.log] [testng] 01:51:38,462 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9653c1 - End of configuration. [testng] [2025-05-07 01:51:39,235] [pool-1-thread-6] Initializing /data/brian/images/BLU.PCT: [testng] 01:51:39,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:51:39,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:39,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_01-51-39.log] [testng] 01:51:39,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca2f6e - End of configuration. [testng] [2025-05-07 01:51:40,306] [pool-1-thread-5] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:51:40,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:51:40,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:40,307 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_01-51-40.log] [testng] 01:51:40,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration. [testng] [2025-05-07 01:51:41,378] [pool-1-thread-4] Initializing /data/misc/swlogo.pict: [testng] 01:51:41,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:51:41,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:41,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_01-51-41.log] [testng] 01:51:41,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6370a348 - End of configuration. [testng] [2025-05-07 01:51:42,553] [pool-1-thread-3] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:51:42,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:51:42,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:42,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_01-51-42.log] [testng] 01:51:42,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration. [testng] [2025-05-07 01:51:43,771] [pool-1-thread-2] Initializing /data/jqd/mireSixteen.pict: [testng] 01:51:43,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:51:43,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:43,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_01-51-43.log] [testng] 01:51:43,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a53f342 - End of configuration. [testng] [2025-05-07 01:51:54,090] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-05-07 01:51:54,946] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B32.pct: [testng] [2025-05-07 01:51:55,948] [pool-1-thread-2] Initializing /data/brian/images/YEL.PCT: [testng] [2025-05-07 01:51:57,101] [pool-1-thread-4] Initializing /data/jqd/32bit.pict: [testng] [2025-05-07 01:51:57,755] [pool-1-thread-7] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-05-07 01:51:58,659] [pool-1-thread-1] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2025-05-07 01:51:59,637] [pool-1-thread-6] Initializing /data/jqd/sixteenBit.pict: [testng] [2025-05-07 01:52:00,787] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-05-07 01:52:01,920] [pool-1-thread-10] Initializing /data/misc/planet.png: [testng] [2025-05-07 01:52:01,998] [pool-1-thread-8] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-05-07 01:52:03,014] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2025-05-07 01:52:04,276] [pool-1-thread-12] Initializing /data/brian/images/RED.PCT: [testng] [2025-05-07 01:52:09,611] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1 minute 17 seconds Finished: SUCCESS