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Started by upstream project "BIOFORMATS-test-repo" build number 394 originally caused by: Started by upstream project "Trigger" build number 463 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins1664918874127199999.sh + '[' avi = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62218_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:57:03,637 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:57:03,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 02:57:03,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:57:03,639 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:57:03,640 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:57:03,640 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:57:03,640 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:57:03,640 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:57:03,641 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:57:03,641 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:57:03,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:57:03,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:57:03,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:57:03,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:57:03,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:57:03,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:57:03,827 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:57:03,827 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:57:03,827 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:57:03,828 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:57:03,828 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 02:57:03,829 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 02:57:03,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-07 02:57:03,838] [main] java.version = 17.0.2 [testng] 02:57:03,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:57:03,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:57:03,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-07_02-57-03.log] [testng] 02:57:03,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-07 02:57:03,889] [main] testng.directory = /data [testng] [2025-05-07 02:57:03,889] [main] testng.configDirectory = /config [testng] [2025-05-07 02:57:03,897] [main] testng.multiplier = 1.0 [testng] [2025-05-07 02:57:03,898] [main] testng.in-memory = false [testng] [2025-05-07 02:57:03,898] [main] testng.allow-missing = false [testng] [2025-05-07 02:57:03,898] [main] user.language = en [testng] [2025-05-07 02:57:03,898] [main] user.country = ${user.country} [testng] [2025-05-07 02:57:03,898] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-07 02:57:39,813] [main] ---------------------------------------- [testng] [2025-05-07 02:57:39,813] [main] Total files: 40 [testng] [2025-05-07 02:57:39,813] [main] Scan time: 35.914 s (897 ms/file) [testng] [2025-05-07 02:57:39,813] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 38 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-07 02:59:47,056] [pool-1-thread-1] Initializing /data/roger/op9middle40x.lsm movie 4.avi: [testng] 02:59:47,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:59:47,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:47,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-07_02-59-47.log] [testng] 02:59:47,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19288f30 - End of configuration. [testng] [2025-05-07 02:59:48,932] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-new.avi: [testng] 02:59:48,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:59:48,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:48,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_02-59-48.log] [testng] 02:59:48,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2edb387d - End of configuration. [testng] [2025-05-07 02:59:50,873] [pool-1-thread-11] Initializing /data/chip_avi/Level003-DB-089.avi: [testng] 02:59:50,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:59:50,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:50,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_02-59-50.log] [testng] 02:59:50,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cad80bf - End of configuration. [testng] [2025-05-07 02:59:52,361] [pool-1-thread-10] Initializing /data/kurt/40x_6um_2.avi: [testng] 02:59:52,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:59:52,362 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:52,362 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_02-59-52.log] [testng] 02:59:52,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d274ac7 - End of configuration. [testng] [2025-05-07 02:59:55,095] [pool-1-thread-9] Initializing /data/kurt/40x_6um.avi: [testng] 02:59:55,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:59:55,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:55,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_02-59-55.log] [testng] 02:59:55,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f5a2e - End of configuration. [testng] [2025-05-07 02:59:57,430] [pool-1-thread-8] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: [testng] 02:59:57,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:59:57,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:57,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_02-59-57.log] [testng] 02:59:57,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39b2c7c0 - End of configuration. [testng] [2025-05-07 02:59:59,449] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: [testng] 02:59:59,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:59:59,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:59:59,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-07_02-59-59.log] [testng] 02:59:59,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd6308e - End of configuration. [testng] [2025-05-07 03:00:00,984] [pool-1-thread-6] Initializing /data/qa-5019/nemo-2_1_.avi: [testng] 03:00:00,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:00:00,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:00,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_03-00-00.log] [testng] 03:00:00,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a9353f - End of configuration. [testng] [2025-05-07 03:00:02,719] [pool-1-thread-5] Initializing /data/jae/20xD_5minfor14h.avi: [testng] 03:00:02,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:00:02,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:02,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_03-00-02.log] [testng] 03:00:02,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@576e112 - End of configuration. [testng] [2025-05-07 03:00:04,972] [pool-1-thread-4] Initializing /data/roger/op9middle40x.lsm movie.avi: [testng] 03:00:04,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:00:04,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:04,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_03-00-04.log] [testng] 03:00:04,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ab2a17d - End of configuration. [testng] [2025-05-07 03:00:06,754] [pool-1-thread-3] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: [testng] 03:00:06,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:00:06,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:06,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_03-00-06.log] [testng] 03:00:06,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24825cb4 - End of configuration. [testng] [2025-05-07 03:00:08,948] [pool-1-thread-2] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: [testng] 03:00:08,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:00:08,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:00:08,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_03-00-08.log] [testng] 03:00:08,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f2331d - End of configuration. [testng] [2025-05-07 03:00:29,220] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: [testng] [2025-05-07 03:00:31,401] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-old.avi: [testng] [2025-05-07 03:00:33,537] [pool-1-thread-10] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: [testng] [2025-05-07 03:00:36,635] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi: [testng] [2025-05-07 03:00:38,913] [pool-1-thread-3] Initializing /data/chip_avi/Level001-ES-083.avi: [testng] [2025-05-07 03:00:41,173] [pool-1-thread-1] Initializing /data/roger/spheroid1.lsm movie.avi: [testng] [2025-05-07 03:00:43,284] [pool-1-thread-9] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: [testng] [2025-05-07 03:00:45,184] [pool-1-thread-2] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: [testng] [2025-05-07 03:00:47,256] [pool-1-thread-11] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: [testng] [2025-05-07 03:00:49,522] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 3.avi: [testng] [2025-05-07 03:00:51,774] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: [testng] [2025-05-07 03:00:54,062] [pool-1-thread-4] Initializing /data/qa-11011/M-flow10001.avi: [testng] [2025-05-07 03:01:12,362] [pool-1-thread-11] Initializing /data/curtis/mri-stack-bf.avi: [testng] [2025-05-07 03:01:13,535] [pool-1-thread-8] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: [testng] [2025-05-07 03:01:14,604] [pool-1-thread-6] Initializing /data/ascb/TIRF.avi: [testng] [2025-05-07 03:01:15,704] [pool-1-thread-1] Initializing /data/simon/24_bit_problem.avi: [testng] [2025-05-07 03:01:17,669] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 2.avi: [testng] [2025-05-07 03:01:19,893] [pool-1-thread-2] Initializing /data/chris/APZ04_009.avi: [testng] [2025-05-07 03:01:22,934] [pool-1-thread-12] Initializing /data/roger/spheroid1-crop.lsm movie.avi: [testng] [2025-05-07 03:01:24,799] [pool-1-thread-3] Initializing /data/kurt/63x_6um.avi: [testng] [2025-05-07 03:01:27,030] [pool-1-thread-4] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: [testng] [2025-05-07 03:01:29,143] [pool-1-thread-7] Initializing /data/william/worm.avi: [testng] [2025-05-07 03:01:31,071] [pool-1-thread-9] Initializing /data/chip_avi/Level004-WA-116.avi: [testng] [2025-05-07 03:01:42,928] [pool-1-thread-10] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: [testng] [2025-05-07 03:01:45,857] [pool-1-thread-11] Initializing /data/prairie/cornea dc and macs.AVI: [testng] [2025-05-07 03:01:53,799] [pool-1-thread-7] Initializing /data/qa-7450/MVI_3610.AVI: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 2014, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 17 seconds Finished: SUCCESS