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Started by upstream project "BIOFORMATS-test-repo" build number 395 originally caused by: Started by upstream project "Trigger" build number 479 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15399289709639637207.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62456_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:40:28,049 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:40:28,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 05:40:28,050 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:40:28,051 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:40:28,052 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:40:28,052 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:40:28,052 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:40:28,052 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:40:28,053 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:40:28,053 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:40:28,053 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:40:28,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:40:28,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:40:28,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:40:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:40:28,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:40:28,241 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:40:28,241 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:40:28,241 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:40:28,242 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:40:28,242 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 05:40:28,243 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 05:40:28,243 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 190 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-15 05:40:28,251] [main] java.version = 21 [testng] 05:40:28,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:40:28,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:28,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-15_05-40-28.log] [testng] 05:40:28,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-05-15 05:40:28,300] [main] testng.directory = /data [testng] [2025-05-15 05:40:28,300] [main] testng.configDirectory = /config [testng] [2025-05-15 05:40:28,309] [main] testng.multiplier = 1.0 [testng] [2025-05-15 05:40:28,309] [main] testng.in-memory = false [testng] [2025-05-15 05:40:28,310] [main] testng.allow-missing = false [testng] [2025-05-15 05:40:28,310] [main] user.language = en [testng] [2025-05-15 05:40:28,310] [main] user.country = ${user.country} [testng] [2025-05-15 05:40:28,310] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-15 05:40:47,066] [main] ---------------------------------------- [testng] [2025-05-15 05:40:47,066] [main] Total files: 22 [testng] [2025-05-15 05:40:47,066] [main] Scan time: 18.756 s (852 ms/file) [testng] [2025-05-15 05:40:47,067] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-15 05:42:07,106] [pool-1-thread-1] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] 05:42:07,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:42:07,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:07,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-15_05-42-07.log] [testng] 05:42:07,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36d00b3c - End of configuration. [testng] [2025-05-15 05:42:13,552] [pool-1-thread-12] Initializing /data/converted/mitosis-test.tif: [testng] 05:42:13,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:42:13,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:13,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-15_05-42-13.log] [testng] 05:42:13,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc61d5c - End of configuration. [testng] [2025-05-15 05:42:19,918] [pool-1-thread-11] Initializing /data/xiuwen/head2.seq: [testng] 05:42:19,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:42:19,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:19,919 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-15_05-42-19.log] [testng] 05:42:19,920 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f4db137 - End of configuration. [testng] [2025-05-15 05:42:22,539] [pool-1-thread-10] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 05:42:22,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:42:22,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:22,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-15_05-42-22.log] [testng] 05:42:22,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4931209 - End of configuration. [testng] [2025-05-15 05:42:25,011] [pool-1-thread-9] Initializing /data/converted/dub01.ipw: [testng] 05:42:25,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:42:25,011 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:25,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-15_05-42-25.log] [testng] 05:42:25,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e93722d - End of configuration. [testng] [2025-05-15 05:42:27,248] [pool-1-thread-8] Initializing /data/samples/FLDUAL.TIF: [testng] 05:42:27,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:42:27,248 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:27,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-15_05-42-27.log] [testng] 05:42:27,249 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9e0ae01 - End of configuration. [testng] [2025-05-15 05:42:32,669] [pool-1-thread-7] Initializing /data/converted/clown8c.tif: [testng] 05:42:32,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:42:32,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:32,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-15_05-42-32.log] [testng] 05:42:32,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c0a8985 - End of configuration. [testng] [2025-05-15 05:42:38,672] [pool-1-thread-6] Initializing /data/samples/PROBE.TIF: [testng] 05:42:38,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:42:38,672 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:38,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-15_05-42-38.log] [testng] 05:42:38,673 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b16d39c - End of configuration. [testng] [2025-05-15 05:42:41,270] [pool-1-thread-5] Initializing /data/converted/clown.ipw: [testng] 05:42:41,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:42:41,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:41,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-15_05-42-41.log] [testng] 05:42:41,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6622a159 - End of configuration. [testng] [2025-05-15 05:42:43,870] [pool-1-thread-4] Initializing /data/converted/clown.tif: [testng] 05:42:43,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:42:43,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:43,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-15_05-42-43.log] [testng] 05:42:43,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bce6f07 - End of configuration. [testng] [2025-05-15 05:42:46,501] [pool-1-thread-3] Initializing /data/converted/clown8c.seq: [testng] 05:42:46,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:42:46,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:46,502 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-15_05-42-46.log] [testng] 05:42:46,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25726066 - End of configuration. [testng] [2025-05-15 05:42:49,094] [pool-1-thread-2] Initializing /data/converted/dub01.seq: [testng] 05:42:49,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:42:49,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:49,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-15_05-42-49.log] [testng] 05:42:49,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba62a0 - End of configuration. [testng] [2025-05-15 05:43:08,078] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: [testng] [2025-05-15 05:43:10,598] [pool-1-thread-10] Initializing /data/samples/TISSUE.TIF: [testng] [2025-05-15 05:43:16,717] [pool-1-thread-9] Initializing /data/converted/clown.seq: [testng] [2025-05-15 05:43:19,367] [pool-1-thread-2] Initializing /data/converted/dub01.pic: [testng] [2025-05-15 05:43:21,848] [pool-1-thread-6] Initializing /data/converted/clown8c.ipw: [testng] [2025-05-15 05:43:24,296] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2025-05-15 05:43:26,361] [pool-1-thread-3] Initializing /data/alex/AFAset0003.ips: [testng] [2025-05-15 05:43:28,966] [pool-1-thread-11] Initializing /data/converted/mitosis-test.ipw: [testng] [2025-05-15 05:43:46,102] [pool-1-thread-7] Initializing /data/converted/mitosis-test.seq: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 minutes 19 seconds Finished: SUCCESS