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Started by upstream project "BIOFORMATS-test-repo" build number 396 originally caused by: Started by upstream project "Trigger" build number 480 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@17 [BIOFORMATS-test-folder@17] $ /bin/bash -xe /tmp/jenkins4098453002435366848.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62488_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:44:48,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:44:48,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:44:48,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:48,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:48,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:44:48,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:44:48,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:44:48,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:48,624 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:48,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:44:48,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:44:48,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:44:48,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:44:48,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:44:48,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:44:48,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:44:48,904 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:44:48,904 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:44:48,905 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:44:48,905 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:44:48,905 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:44:48,906 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:44:48,906 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-16 01:44:48,917] [main] java.version = 1.8.0_342 [testng] 01:44:48,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:44:48,921 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:48,968 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_01-44-48.log] [testng] 01:44:48,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-16 01:44:48,972] [main] testng.directory = /data [testng] [2025-05-16 01:44:48,972] [main] testng.configDirectory = /config [testng] [2025-05-16 01:44:48,985] [main] testng.multiplier = 1.0 [testng] [2025-05-16 01:44:48,985] [main] testng.in-memory = false [testng] [2025-05-16 01:44:48,985] [main] testng.allow-missing = false [testng] [2025-05-16 01:44:48,985] [main] user.language = en [testng] [2025-05-16 01:44:48,985] [main] user.country = ${user.country} [testng] [2025-05-16 01:44:48,985] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-16 01:44:51,472] [main] ---------------------------------------- [testng] [2025-05-16 01:44:51,472] [main] Total files: 31 [testng] [2025-05-16 01:44:51,472] [main] Scan time: 2.486 s (80 ms/file) [testng] [2025-05-16 01:44:51,472] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-16 01:44:59,096] [pool-1-thread-1] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] 01:44:59,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:44:59,096 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-16_01-44-59.log] [testng] 01:44:59,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@112bc076 - End of configuration. [testng] [2025-05-16 01:44:59,237] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:44:59,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:44:59,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-16_01-44-59.log] [testng] 01:44:59,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa59f19 - End of configuration. [testng] [2025-05-16 01:44:59,368] [pool-1-thread-11] Initializing /data/curtis/image1.bmp: [testng] 01:44:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:44:59,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-16_01-44-59.log] [testng] 01:44:59,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f492b2 - End of configuration. [testng] [2025-05-16 01:44:59,494] [pool-1-thread-10] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] 01:44:59,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:44:59,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,495 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-16_01-44-59.log] [testng] 01:44:59,496 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e7f93c - End of configuration. [testng] [2025-05-16 01:44:59,607] [pool-1-thread-9] Initializing /data/brian/images/raw_a_rg.tiff: [testng] 01:44:59,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:44:59,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:59,608 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-16_01-44-59.log] [testng] 01:44:59,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23dd36a4 - End of configuration. [testng] [2025-05-16 01:45:00,933] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:45:00,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:45:00,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:00,934 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-16_01-45-00.log] [testng] 01:45:00,934 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552aec55 - End of configuration. [testng] [2025-05-16 01:45:01,082] [pool-1-thread-7] Initializing /data/big-images/6kx6k.bmp: [testng] 01:45:01,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:45:01,082 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,083 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-16_01-45-01.log] [testng] 01:45:01,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f46765 - End of configuration. [testng] [2025-05-16 01:45:01,216] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] 01:45:01,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:45:01,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-16_01-45-01.log] [testng] 01:45:01,217 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ad3190c - End of configuration. [testng] [2025-05-16 01:45:01,340] [pool-1-thread-5] Initializing /data/big-images/8kx8k.bmp: [testng] 01:45:01,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:45:01,341 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-16_01-45-01.log] [testng] 01:45:01,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75b3e0cb - End of configuration. [testng] [2025-05-16 01:45:01,484] [pool-1-thread-4] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:45:01,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:45:01,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-16_01-45-01.log] [testng] 01:45:01,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7006e9ba - End of configuration. [testng] [2025-05-16 01:45:01,641] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] 01:45:01,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:45:01,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-16_01-45-01.log] [testng] 01:45:01,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6ea72c - End of configuration. [testng] [2025-05-16 01:45:01,821] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] 01:45:01,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:45:01,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:01,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-16_01-45-01.log] [testng] 01:45:01,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c58487f - End of configuration. [testng] [2025-05-16 01:45:06,048] [pool-1-thread-11] Initializing /data/curtis/image4.bmp: [testng] [2025-05-16 01:45:06,461] [pool-1-thread-10] Initializing /data/curtis/image3.bmp: [testng] [2025-05-16 01:45:06,591] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2025-05-16 01:45:06,723] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2025-05-16 01:45:06,850] [pool-1-thread-8] Initializing /data/curtis/image5.bmp: [testng] [2025-05-16 01:45:06,982] [pool-1-thread-3] Initializing /data/frank/cell_mask_error.bmp: [testng] [2025-05-16 01:45:07,079] [pool-1-thread-12] Initializing /data/bk/ch_00.bmp: [testng] [2025-05-16 01:45:07,197] [pool-1-thread-6] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2025-05-16 01:45:07,316] [pool-1-thread-4] Initializing /data/ticket-12971/foo.bmp: [testng] [2025-05-16 01:45:09,564] [pool-1-thread-8] Initializing /data/brian/images/raw_a.bmp: [testng] [2025-05-16 01:45:09,682] [pool-1-thread-4] Initializing /data/curtis/image2.bmp: [testng] [2025-05-16 01:45:09,804] [pool-1-thread-11] Initializing /data/big-images/6kx6k-grey.bmp: [testng] [2025-05-16 01:45:09,931] [pool-1-thread-10] Initializing /data/stephane/holo0908.bmp: [testng] [2025-05-16 01:45:10,103] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2025-05-16 01:45:10,237] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] [2025-05-16 01:45:10,386] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2025-05-16 01:45:10,922] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2025-05-16 01:45:11,564] [pool-1-thread-6] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2025-05-16 01:45:12,271] [pool-1-thread-4] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS