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Started by upstream project "BIOFORMATS-test-repo" build number 44 originally caused by: Started by upstream project "Trigger" build number 51 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins301093738284173075.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6256_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:30:46,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:30:46,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 01:30:46,620 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:46,621 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:30:46,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:30:46,622 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:30:46,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:30:46,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:46,623 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:30:46,623 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:30:46,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:30:46,624 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:30:46,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:46,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:46,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:46,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:46,820 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:46,820 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:46,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:46,820 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:46,820 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 01:30:46,821 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 01:30:46,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-25 01:30:46,830] [main] java.version = 21 [testng] 01:30:46,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:46,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:46,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_01-30-46.log] [testng] 01:30:46,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-25 01:30:46,877] [main] testng.directory = /data [testng] [2024-04-25 01:30:46,877] [main] testng.configDirectory = /config [testng] [2024-04-25 01:30:46,886] [main] testng.multiplier = 1.0 [testng] [2024-04-25 01:30:46,887] [main] testng.in-memory = false [testng] [2024-04-25 01:30:46,887] [main] testng.allow-missing = false [testng] [2024-04-25 01:30:46,887] [main] user.language = en [testng] [2024-04-25 01:30:46,887] [main] user.country = ${user.country} [testng] [2024-04-25 01:30:46,887] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-25 01:30:47,245] [main] ---------------------------------------- [testng] [2024-04-25 01:30:47,245] [main] Total files: 25 [testng] [2024-04-25 01:30:47,245] [main] Scan time: 0.358 s (14 ms/file) [testng] [2024-04-25 01:30:47,246] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-25 01:30:49,384] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 01:30:49,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:49,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_01-30-49.log] [testng] 01:30:49,387 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fae0a6f - End of configuration. [testng] [2024-04-25 01:30:49,408] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 01:30:49,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:49,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,409 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_01-30-49.log] [testng] 01:30:49,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24faf9bb - End of configuration. [testng] [2024-04-25 01:30:49,418] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 01:30:49,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:49,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_01-30-49.log] [testng] 01:30:49,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42bcb890 - End of configuration. [testng] [2024-04-25 01:30:49,491] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 01:30:49,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:49,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_01-30-49.log] [testng] 01:30:49,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@484a66c3 - End of configuration. [testng] [2024-04-25 01:30:49,677] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 01:30:49,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:49,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_01-30-49.log] [testng] 01:30:49,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e92f434 - End of configuration. [testng] [2024-04-25 01:30:49,754] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 01:30:49,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:49,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_01-30-49.log] [testng] 01:30:49,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3948f91c - End of configuration. [testng] [2024-04-25 01:30:49,773] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:30:49,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:49,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,775 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_01-30-49.log] [testng] 01:30:49,776 |-INFO in ch.qos.logback.core.sift.SiftProcessor@629bcc5b - End of configuration. [testng] [2024-04-25 01:30:49,861] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 01:30:49,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:49,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:49,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_01-30-49.log] [testng] 01:30:49,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43cde3e7 - End of configuration. [testng] [2024-04-25 01:30:50,086] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 01:30:50,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:50,087 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,088 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_01-30-50.log] [testng] 01:30:50,088 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a18c3dd - End of configuration. [testng] [2024-04-25 01:30:50,116] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 01:30:50,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:50,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,118 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_01-30-50.log] [testng] 01:30:50,118 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration. [testng] [2024-04-25 01:30:50,167] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:30:50,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:50,167 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_01-30-50.log] [testng] 01:30:50,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47ca52ea - End of configuration. [testng] [2024-04-25 01:30:50,432] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 01:30:50,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:50,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:50,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_01-30-50.log] [testng] 01:30:50,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6bbc3868 - End of configuration. [testng] [2024-04-25 01:30:52,917] [pool-1-thread-9] Initializing /data/misc/planet2.pict: [testng] [2024-04-25 01:30:52,989] [pool-1-thread-8] Initializing /data/brian/images/YEL.PCT: [testng] [2024-04-25 01:30:53,015] [pool-1-thread-5] Initializing /data/brian/images/TRU256.PCT: [testng] [2024-04-25 01:30:53,035] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-04-25 01:30:53,049] [pool-1-thread-12] Initializing /data/brian/images/BLU.PCT: [testng] [2024-04-25 01:30:53,064] [pool-1-thread-2] Initializing /data/jqd/32bit.pict: [testng] [2024-04-25 01:30:53,088] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2024-04-25 01:30:53,095] [pool-1-thread-4] Initializing /data/brian/images/GRN.PCT: [testng] [2024-04-25 01:30:53,216] [pool-1-thread-7] Initializing /data/brian/images/RED.PCT: [testng] [2024-04-25 01:30:53,349] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2024-04-25 01:30:53,379] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-04-25 01:30:53,585] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-04-25 01:30:53,602] [pool-1-thread-10] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 13 seconds Finished: SUCCESS