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Started by upstream project "BIOFORMATS-test-repo" build number 396 originally caused by: Started by upstream project "Trigger" build number 480 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13586220095560474818.sh + '[' leica-tcs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62607_merge_ci -v /uod/idr/repos/curated/leica-tcs:/data -v /uod/idr-scratch/merge-ci/curated/leica-tcs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:11:47,961 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 07:11:47,962 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 07:11:47,963 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:47,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:11:47,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:11:47,964 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:11:47,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:11:47,964 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:47,965 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:11:47,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:11:47,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:11:47,965 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:11:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:11:48,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:11:48,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:11:48,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:11:48,225 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:11:48,225 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:11:48,225 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:11:48,226 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:11:48,226 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 07:11:48,227 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 07:11:48,227 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 262 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-16 07:11:48,237] [main] java.version = 1.8.0_342 [testng] 07:11:48,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:11:48,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:11:48,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_07-11-48.log] [testng] 07:11:48,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-16 07:11:48,289] [main] testng.directory = /data [testng] [2025-05-16 07:11:48,289] [main] testng.configDirectory = /config [testng] [2025-05-16 07:11:48,301] [main] testng.multiplier = 1.0 [testng] [2025-05-16 07:11:48,302] [main] testng.in-memory = false [testng] [2025-05-16 07:11:48,302] [main] testng.allow-missing = false [testng] [2025-05-16 07:11:48,302] [main] user.language = en [testng] [2025-05-16 07:11:48,302] [main] user.country = ${user.country} [testng] [2025-05-16 07:11:48,302] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-16 07:12:22,007] [main] ---------------------------------------- [testng] [2025-05-16 07:12:22,008] [main] Total files: 944 [testng] [2025-05-16 07:12:22,008] [main] Scan time: 33.705 s (35 ms/file) [testng] [2025-05-16 07:12:22,008] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-16 07:21:27,046] [pool-1-thread-1] Initializing /data/stjude/AntoDay1cy3/c01f0001.TIF: [testng] 07:21:27,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:21:27,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:21:27,048 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-16_07-21-27.log] [testng] 07:21:27,048 |-INFO in ch.qos.logback.core.sift.SiftProcessor@506e7658 - End of configuration. [testng] [2025-05-16 07:21:35,862] [pool-1-thread-12] Initializing /data/dave/series 35/042911_Series035_t00_z000_ch00.tif: [testng] 07:21:35,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:21:35,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:21:35,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-16_07-21-35.log] [testng] 07:21:35,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d8c368c - End of configuration. [testng] [2025-05-16 07:26:56,829] [pool-1-thread-11] Initializing /data/martin/Series028_z00_ch00.tif: [testng] 07:26:56,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:26:56,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:26:56,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-16_07-26-56.log] [testng] 07:26:56,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6720c8fd - End of configuration. [testng] [2025-05-16 07:27:03,170] [pool-1-thread-10] Initializing /data/brian/Series002_z00_ch00.tif: [testng] 07:27:03,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:27:03,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:03,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-16_07-27-03.log] [testng] 07:27:03,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71bc0f08 - End of configuration. [testng] [2025-05-16 07:27:11,762] [pool-1-thread-9] Initializing /data/stjude/AntoDay1dblGRP.tif: [testng] 07:27:11,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:27:11,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:11,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-16_07-27-11.log] [testng] 07:27:11,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b65f228 - End of configuration. [testng] [2025-05-16 07:27:20,392] [pool-1-thread-8] Initializing /data/stjude/Antoday1dblcatsglGRP.tif: [testng] 07:27:20,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:27:20,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:20,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-16_07-27-20.log] [testng] 07:27:20,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@407426b - End of configuration. [testng] [2025-05-16 07:27:29,597] [pool-1-thread-7] Initializing /data/stjude/AntoDay4dblcatdataGRP.tif: [testng] 07:27:29,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:27:29,597 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:29,598 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-16_07-27-29.log] [testng] 07:27:29,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b05f80c - End of configuration. [testng] [2025-05-16 07:27:39,525] [pool-1-thread-6] Initializing /data/stjude/Antoday1dblmysglGRP.tif: [testng] 07:27:39,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:27:39,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:39,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-16_07-27-39.log] [testng] 07:27:39,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7489df23 - End of configuration. [testng] [2025-05-16 07:27:47,524] [pool-1-thread-5] Initializing /data/stjude/AntoDayzerocy3GRP.tif: [testng] 07:27:47,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:27:47,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:27:47,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-16_07-27-47.log] [testng] 07:27:47,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4795a84f - End of configuration. [testng] [2025-05-16 07:28:00,467] [pool-1-thread-4] Initializing /data/primate/Leica_Image.tif: [testng] 07:28:00,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:28:00,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:28:00,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-16_07-28-00.log] [testng] 07:28:00,468 |-INFO in ch.qos.logback.core.sift.SiftProcessor@202a8051 - End of configuration. [testng] [2025-05-16 07:28:10,626] [pool-1-thread-3] Initializing /data/brian/Series002_z01.tif: [testng] 07:28:10,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:28:10,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:28:10,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-16_07-28-10.log] [testng] 07:28:10,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@301b9aba - End of configuration. [testng] [2025-05-16 07:28:27,537] [pool-1-thread-2] Initializing /data/stjude/AntoDay4dblmy2GRP.tif: [testng] 07:28:27,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:28:27,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:28:27,538 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-16_07-28-27.log] [testng] 07:28:27,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37013c0 - End of configuration. [testng] [2025-05-16 07:29:54,606] [pool-1-thread-1] Initializing /data/stjude/AntoDayzerocy3OVP.tif: [testng] [2025-05-16 07:30:07,468] [pool-1-thread-4] Initializing /data/stjude/Antoday1dblcat2dataGRP.tif: [testng] [2025-05-16 07:30:56,033] [pool-1-thread-3] Initializing /data/stjude/AntoDay4dblmyGRP.tif: [testng] 22:10:34,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 22:10:34,985 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 22:10:34,986 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_22-10-34.log] [testng] 22:10:34,986 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f0f72c - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 898 minutes 49 seconds Finished: SUCCESS