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Started by upstream project "BIOFORMATS-test-repo" build number 396 originally caused by: Started by upstream project "Trigger" build number 480 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@16 [BIOFORMATS-test-folder@16] $ /bin/bash -xe /tmp/jenkins12498885560295508440.sh + '[' jpeg2000 = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62620_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 08:51:04,819 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:51:04,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 08:51:04,821 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:51:04,822 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:51:04,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:51:04,822 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:51:04,823 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:51:05,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:51:05,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:51:05,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:51:05,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:51:05,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:51:05,064 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:51:05,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:51:05,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:51:05,065 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 08:51:05,065 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 08:51:05,065 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 242 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-16 08:51:05,074] [main] java.version = 1.8.0_342 [testng] 08:51:05,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:51:05,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:51:05,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_08-51-05.log] [testng] 08:51:05,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-16 08:51:05,123] [main] testng.directory = /data [testng] [2025-05-16 08:51:05,123] [main] testng.configDirectory = /config [testng] [2025-05-16 08:51:05,135] [main] testng.multiplier = 1.0 [testng] [2025-05-16 08:51:05,135] [main] testng.in-memory = false [testng] [2025-05-16 08:51:05,135] [main] testng.allow-missing = false [testng] [2025-05-16 08:51:05,135] [main] user.language = en [testng] [2025-05-16 08:51:05,135] [main] user.country = ${user.country} [testng] [2025-05-16 08:51:05,135] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-16 08:53:59,546] [main] ---------------------------------------- [testng] [2025-05-16 08:53:59,547] [main] Total files: 31 [testng] [2025-05-16 08:53:59,547] [main] Scan time: 174.411 s (5626 ms/file) [testng] [2025-05-16 08:53:59,547] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 30 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-16 08:57:22,017] [pool-1-thread-1] Initializing /data/misc/clown-rgb.jp2: [testng] 08:57:22,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:57:22,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:22,018 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-16_08-57-22.log] [testng] 08:57:22,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f5e99e - End of configuration. [testng] [2025-05-16 08:57:27,830] [pool-1-thread-12] Initializing /data/venu/Multichannel 3a.jpg: [testng] 08:57:27,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:57:27,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:27,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-16_08-57-27.log] [testng] 08:57:27,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a980a9 - End of configuration. [testng] [2025-05-16 08:57:29,115] [pool-1-thread-11] Initializing /data/angel/002_L050071_32_01_09_x2.jp2: [testng] 08:57:29,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 08:57:29,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:29,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-16_08-57-29.log] [testng] 08:57:29,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18bc9d90 - End of configuration. [testng] [2025-05-16 08:57:35,044] [pool-1-thread-10] Initializing /data/aryeh/flour 12.jp2: [testng] 08:57:35,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 08:57:35,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:35,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-16_08-57-35.log] [testng] 08:57:35,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5207424 - End of configuration. [testng] [2025-05-16 08:57:41,344] [pool-1-thread-9] Initializing /data/misc/clown-rgb.jpc: [testng] 08:57:41,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:57:41,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:41,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-16_08-57-41.log] [testng] 08:57:41,345 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cf3c54a - End of configuration. [testng] [2025-05-16 08:57:46,747] [pool-1-thread-8] Initializing /data/mike/LCM-4-3-color-cleaned.tiff: [testng] 08:57:46,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 08:57:46,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:46,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-16_08-57-46.log] [testng] 08:57:46,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b1828c1 - End of configuration. [testng] [2025-05-16 08:58:01,063] [pool-1-thread-7] Initializing /data/david/C1R1_FOS.jp2: [testng] 08:58:01,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 08:58:01,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:01,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-16_08-58-01.log] [testng] 08:58:01,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47e69113 - End of configuration. [testng] [2025-05-16 08:58:06,631] [pool-1-thread-6] Initializing /data/vikram/Captured 5.jp2: [testng] 08:58:06,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 08:58:06,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:06,632 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-16_08-58-06.log] [testng] 08:58:06,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ee72353 - End of configuration. [testng] [2025-05-16 08:58:11,863] [pool-1-thread-5] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2: [testng] 08:58:11,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:58:11,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:11,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-16_08-58-11.log] [testng] 08:58:11,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99c4f72 - End of configuration. [testng] [2025-05-16 08:58:17,380] [pool-1-thread-4] Initializing /data/kraig/head.jp2: [testng] 08:58:17,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 08:58:17,380 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:17,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-16_08-58-17.log] [testng] 08:58:17,381 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e8abb18 - End of configuration. [testng] [2025-05-16 08:58:23,750] [pool-1-thread-3] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx: [testng] 08:58:23,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:58:23,750 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:23,751 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-16_08-58-23.log] [testng] 08:58:23,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ac2207 - End of configuration. [testng] [2025-05-16 08:58:28,154] [pool-1-thread-2] Initializing /data/vikram/Captured 2.jp2: [testng] 08:58:28,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 08:58:28,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:58:28,155 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-16_08-58-28.log] [testng] 08:58:28,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e68aa - End of configuration. [testng] [2025-05-16 08:59:01,104] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned.jp2: [testng] [2025-05-16 08:59:11,018] [pool-1-thread-9] Initializing /data/venu/Multichannel 3.jp2: [testng] [2025-05-16 08:59:17,369] [pool-1-thread-1] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2: [testng] [2025-05-16 08:59:22,944] [pool-1-thread-5] Initializing /data/big-images/8kx8k.jpf: [testng] [2025-05-16 08:59:28,327] [pool-1-thread-2] Initializing /data/vikram/Captured 4.jp2: [testng] [2025-05-16 08:59:33,624] [pool-1-thread-4] Initializing /data/david/multichannel-3d-MBF-type.jpx: [testng] [2025-05-16 08:59:39,477] [pool-1-thread-10] Initializing /data/big-images/4kx4k.jpf: [testng] [2025-05-16 08:59:44,345] [pool-1-thread-6] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff: [testng] [2025-05-16 08:59:57,418] [pool-1-thread-11] Initializing /data/angel/052_L050071_56_x2hv.jp2: [testng] [2025-05-16 09:00:20,057] [pool-1-thread-7] Initializing /data/david/cy5-tph.jp2: [testng] [2025-05-16 09:00:35,020] [pool-1-thread-8] Initializing /data/misc/clown-rgb.jbig: [testng] [2025-05-16 09:00:50,356] [pool-1-thread-12] Initializing /data/david/000000_000001.jpx: [testng] [2025-05-16 09:00:56,518] [pool-1-thread-2] Initializing /data/frans/flower.jp2: [testng] [2025-05-16 09:01:03,200] [pool-1-thread-1] Initializing /data/big-images/2kx2k.jpf: [testng] [2025-05-16 09:01:08,769] [pool-1-thread-9] Initializing /data/david/multichannel-2d test.jp2: [testng] [2025-05-16 09:01:28,890] [pool-1-thread-11] Initializing /data/vikram/Captured 1.jp2: [testng] [2025-05-16 09:01:49,208] [pool-1-thread-10] Initializing /data/david/multichannel-2d test-non MBF-type.jp2: [testng] [2025-05-16 09:02:07,288] [pool-1-thread-6] Initializing /data/vikram/Captured 3.jp2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1590, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 minutes 42 seconds Finished: SUCCESS