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Started by upstream project "BIOFORMATS-test-repo" build number 397 originally caused by: Started by upstream project "Trigger" build number 481 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins13305835281578019662.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62747_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 05:43:06,926 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:43:06,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 05:43:06,928 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:43:06,929 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:43:06,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:43:06,929 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:43:06,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:43:06,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:43:06,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:43:06,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:43:06,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:43:06,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:43:07,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:43:07,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:43:07,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:43:07,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:43:07,123 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:43:07,123 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:43:07,123 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:43:07,124 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:43:07,124 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 05:43:07,124 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 05:43:07,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 195 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-17 05:43:07,133] [main] java.version = 11.0.16 [testng] 05:43:07,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:43:07,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:07,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-17_05-43-07.log] [testng] 05:43:07,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-05-17 05:43:07,181] [main] testng.directory = /data [testng] [2025-05-17 05:43:07,181] [main] testng.configDirectory = /config [testng] [2025-05-17 05:43:07,190] [main] testng.multiplier = 1.0 [testng] [2025-05-17 05:43:07,192] [main] testng.in-memory = false [testng] [2025-05-17 05:43:07,192] [main] testng.allow-missing = false [testng] [2025-05-17 05:43:07,192] [main] user.language = en [testng] [2025-05-17 05:43:07,192] [main] user.country = ${user.country} [testng] [2025-05-17 05:43:07,192] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-17 05:49:35,083] [main] ---------------------------------------- [testng] [2025-05-17 05:49:35,083] [main] Total files: 73 [testng] [2025-05-17 05:49:35,083] [main] Scan time: 387.891 s (5313 ms/file) [testng] [2025-05-17 05:49:35,083] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 63 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-17 05:56:52,307] [pool-1-thread-1] Initializing /data/niko/imaris-testfile_5x5x5.ims: [testng] 05:56:52,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:56:52,308 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:52,310 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-17_05-56-52.log] [testng] 05:56:52,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7aa116 - End of configuration. [testng] [2025-05-17 05:56:57,523] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0004.ims: [testng] 05:56:57,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:56:57,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:57,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-17_05-56-57.log] [testng] 05:56:57,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@137e5e9a - End of configuration. [testng] [2025-05-17 05:56:58,573] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0002.ims: [testng] 05:56:58,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:56:58,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:58,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-17_05-56-58.log] [testng] 05:56:58,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7598c286 - End of configuration. [testng] [2025-05-17 05:56:59,716] [pool-1-thread-10] Initializing /data/generated/10-31_E_t0005.ims: [testng] 05:56:59,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:56:59,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:59,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-17_05-56-59.log] [testng] 05:56:59,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42b6cac3 - End of configuration. [testng] [2025-05-17 05:57:00,959] [pool-1-thread-9] Initializing /data/generated/10-31_E_t0001.ims: [testng] 05:57:00,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:57:00,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:00,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-17_05-57-00.log] [testng] 05:57:00,960 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc0d5c8 - End of configuration. [testng] [2025-05-17 05:57:02,208] [pool-1-thread-8] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] 05:57:02,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:57:02,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:02,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-17_05-57-02.log] [testng] 05:57:02,209 |-INFO in ch.qos.logback.core.sift.SiftProcessor@431a4505 - End of configuration. [testng] [2025-05-17 05:57:06,798] [pool-1-thread-7] Initializing /data/public/bitplane/performance/performanceTestImage.ims: [testng] 05:57:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:57:06,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:06,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-17_05-57-06.log] [testng] 05:57:06,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4511085d - End of configuration. [testng] [2025-05-17 05:57:12,538] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0009.ims: [testng] 05:57:12,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:57:12,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:12,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-17_05-57-12.log] [testng] 05:57:12,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57d72e47 - End of configuration. [testng] [2025-05-17 05:57:15,014] [pool-1-thread-5] Initializing /data/qa-17839/Fusion _Stack.ims: [testng] 05:57:15,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:57:15,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:15,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-17_05-57-15.log] [testng] 05:57:15,015 |-INFO in ch.qos.logback.core.sift.SiftProcessor@127bc83 - End of configuration. [testng] [2025-05-17 05:57:21,228] [pool-1-thread-4] Initializing /data/jason/imaris_5_5_demoimages/PlantCell.ims: [testng] 05:57:21,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:57:21,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:21,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-17_05-57-21.log] [testng] 05:57:21,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@688ed87c - End of configuration. [testng] [2025-05-17 05:57:27,247] [pool-1-thread-3] Initializing /data/jason/imaris_5_5_demoimages/retina.ims: [testng] 05:57:27,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:57:27,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:27,248 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-17_05-57-27.log] [testng] 05:57:27,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a1f40c8 - End of configuration. [testng] [2025-05-17 05:57:32,498] [pool-1-thread-2] Initializing /data/oliver/Stack2_u16Bit.ims: [testng] 05:57:32,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:57:32,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:32,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-17_05-57-32.log] [testng] 05:57:32,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@737d922 - End of configuration. BUILD SUCCESSFUL Total time: 21 minutes 4 seconds Finished: SUCCESS