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Started by upstream project "BIOFORMATS-test-repo" build number 398 originally caused by: Started by upstream project "Trigger" build number 484 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3152708960458371771.sh + '[' fv1000 = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62837_merge_ci -v /uod/idr/repos/curated/fv1000:/data -v /uod/idr-scratch/merge-ci/curated/fv1000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:59:07,452 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:59:07,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 01:59:07,454 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:07,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:59:07,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:59:07,455 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:59:07,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:59:07,455 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:07,456 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:59:07,456 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:59:07,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:59:07,457 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:59:07,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:59:07,616 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:59:07,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:59:07,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:59:07,644 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:59:07,644 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:59:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:59:07,644 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:59:07,644 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 01:59:07,645 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 01:59:07,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-18 01:59:07,654] [main] java.version = 17.0.2 [testng] 01:59:07,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:59:07,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:59:07,697 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_01-59-07.log] [testng] 01:59:07,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-18 01:59:07,700] [main] testng.directory = /data [testng] [2025-05-18 01:59:07,701] [main] testng.configDirectory = /config [testng] [2025-05-18 01:59:07,709] [main] testng.multiplier = 1.0 [testng] [2025-05-18 01:59:07,710] [main] testng.in-memory = false [testng] [2025-05-18 01:59:07,710] [main] testng.allow-missing = false [testng] [2025-05-18 01:59:07,710] [main] user.language = en [testng] [2025-05-18 01:59:07,710] [main] user.country = ${user.country} [testng] [2025-05-18 01:59:07,710] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-18 02:06:49,898] [main] ---------------------------------------- [testng] [2025-05-18 02:06:49,898] [main] Total files: 259 [testng] [2025-05-18 02:06:49,898] [main] Scan time: 462.188 s (1784 ms/file) [testng] [2025-05-18 02:06:49,899] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 144 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-18 04:30:25,708] [pool-1-thread-1] Initializing /data/aryeh/1h.oib: [testng] 04:30:25,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:30:25,709 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:25,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_04-30-25.log] [testng] 04:30:25,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e01b768 - End of configuration. [testng] [2025-05-18 04:30:33,282] [pool-1-thread-12] Initializing /data/tom/RGB-1.avi: [testng] 04:30:33,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:30:33,282 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:33,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_04-30-33.log] [testng] 04:30:33,283 |-INFO in ch.qos.logback.core.sift.SiftProcessor@219e67ce - End of configuration. [testng] [2025-05-18 04:30:37,396] [pool-1-thread-11] Initializing /data/shane/Data Subset/MHC1_control.oif: [testng] 04:30:37,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:30:37,396 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:37,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_04-30-37.log] [testng] 04:30:37,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20772c70 - End of configuration. [testng] [2025-05-18 04:30:46,870] [pool-1-thread-10] Initializing /data/qa-17748/Image0098.oib: [testng] 04:30:46,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:30:46,870 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:46,871 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_04-30-46.log] [testng] 04:30:46,871 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a23b77a - End of configuration. [testng] [2025-05-18 04:30:53,668] [pool-1-thread-9] Initializing /data/shane/Data Subset/EX5-10 fresh plan.oib: [testng] 04:30:53,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:30:53,668 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:30:53,669 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_04-30-53.log] [testng] 04:30:53,669 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b6d87e0 - End of configuration. [testng] [2025-05-18 04:31:00,766] [pool-1-thread-8] Initializing /data/daniel/M1(0 0 146)-r1-drift8_3-6-3s_4Hz_0.006cpp_fillfact-0.25-0.488mspl-3x.oib: [testng] 04:31:00,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:31:00,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:00,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_04-31-00.log] [testng] 04:31:00,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f8f5386 - End of configuration. [testng] [2025-05-18 04:31:13,990] [pool-1-thread-7] Initializing /data/brian/MitoRed-POPO3.oib: [testng] 04:31:13,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:31:13,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:13,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_04-31-13.log] [testng] 04:31:13,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a734d1 - End of configuration. [testng] [2025-05-18 04:31:21,094] [pool-1-thread-6] Initializing /data/stefan/YC2_spectrum-405.oib: [testng] 04:31:21,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:31:21,094 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:21,095 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_04-31-21.log] [testng] 04:31:21,095 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60bcad75 - End of configuration. [testng] [2025-05-18 04:31:27,500] [pool-1-thread-5] Initializing /data/johannes/Image0006/Image0006.oif: [testng] 04:31:27,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:31:27,501 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:27,501 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_04-31-27.log] [testng] 04:31:27,502 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e4d1825 - End of configuration. [testng] [2025-05-18 04:31:43,886] [pool-1-thread-4] Initializing /data/bojana/XYT_FirstBolus.oib: [testng] 04:31:43,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:31:43,887 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:43,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_04-31-43.log] [testng] 04:31:43,889 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f12ee7 - End of configuration. [testng] [2025-05-18 04:31:50,997] [pool-1-thread-3] Initializing /data/glen/notsaturated.oif: [testng] 04:31:50,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:31:50,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:31:50,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_04-31-50.log] [testng] 04:31:50,998 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6eb24782 - End of configuration. [testng] [2025-05-18 04:32:20,492] [pool-1-thread-2] Initializing /data/glen/LUT issue/UVgreenredfarred.oif: [testng] 04:32:20,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:32:20,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:32:20,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_04-32-20.log] [testng] 04:32:20,493 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77047bff - End of configuration. [testng] [2025-05-18 04:33:07,487] [pool-1-thread-12] Initializing /data/aryeh/061010 plate 1/Image0002_07.oib: [testng] [2025-05-18 04:33:32,381] [pool-1-thread-9] Initializing /data/brian/CagedATP CaG7a.oib: [testng] [2025-05-18 04:33:40,699] [pool-1-thread-6] Initializing /data/lavinia/NM1-RibB-NeuroD-uninjected.oib: [testng] [2025-05-18 04:33:49,095] [pool-1-thread-10] Initializing /data/molly/11OCT5.OIF: [testng] [2025-05-18 04:36:22,518] [pool-1-thread-7] Initializing /data/aryeh/030408 2 1.oib: [testng] [2025-05-18 04:36:30,596] [pool-1-thread-1] Initializing /data/stefan/cytosol_03e.oib: [testng] [2025-05-18 04:36:38,474] [pool-1-thread-4] Initializing /data/barbara/Image_with_failed_import.oib: [testng] [2025-05-18 04:36:54,283] [pool-1-thread-8] Initializing /data/glen/seqlinestack.oib: [testng] [2025-05-18 04:37:26,402] [pool-1-thread-12] Initializing /data/karl/Image0009.oib: [testng] [2025-05-18 04:37:43,254] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_05.oib: [testng] [2025-05-18 04:37:51,946] [pool-1-thread-7] Initializing /data/lavinia/NM1-RibA-RibB-side.oib: [testng] [2025-05-18 04:37:59,855] [pool-1-thread-9] Initializing /data/francesco/fGfp.c15.oib: [testng] [2025-05-18 04:38:07,860] [pool-1-thread-6] Initializing /data/glen/seqlinestack.oif: [testng] [2025-05-18 04:39:27,380] [pool-1-thread-1] Initializing /data/glen/Image0002.oif: [testng] [2025-05-18 04:40:14,799] [pool-1-thread-8] Initializing /data/jcb/200909024/Sup Fig 2/2.oib: [testng] [2025-05-18 04:40:48,218] [pool-1-thread-12] Initializing /data/dan/EGFR-GFP_ptyr-555 FRET test.oib: [testng] [2025-05-18 04:41:06,100] [pool-1-thread-9] Initializing /data/aryeh/061010 plate 1/Image0002_03.oib: [testng] [2025-05-18 04:41:14,659] [pool-1-thread-11] Initializing /data/glen/singleseqline.oib: [testng] [2025-05-18 04:41:22,766] [pool-1-thread-7] Initializing /data/satoshi/60x_5x_1.oif: [testng] [2025-05-18 04:41:46,148] [pool-1-thread-4] Initializing /data/glen/notsaturated.oib: [testng] [2025-05-18 04:41:55,244] [pool-1-thread-8] Initializing /data/molly/13SH2bUTRtime4b.oib: [testng] [2025-05-18 04:42:39,345] [pool-1-thread-12] Initializing /data/simon/used_to_work.oib: [testng] [2025-05-18 04:43:04,197] [pool-1-thread-11] Initializing /data/stephane/817A_3-0003_01.oib: [testng] [2025-05-18 04:43:18,784] [pool-1-thread-4] Initializing /data/molly/11OCT8.OIF: [testng] [2025-05-18 04:45:56,772] [pool-1-thread-9] Initializing /data/stefan/cytosol_01a.oif: [testng] [2025-05-18 05:00:49,036] [pool-1-thread-8] Initializing /data/stefan/yc2_live-03.oib: [testng] [2025-05-18 05:01:11,183] [pool-1-thread-12] Initializing /data/paul/Day 4 1 FBS flat - cell 6 - green.oib: [testng] [2025-05-18 05:01:20,750] [pool-1-thread-11] Initializing /data/christian/20min.oif: [testng] [2025-05-18 05:01:29,496] [pool-1-thread-2] Initializing /data/brian/CagedATP CaG+FuraR3_a.oib: [testng] [2025-05-18 05:01:50,052] [pool-1-thread-8] Initializing /data/brian/CagedATP CaG+FuraR3.oib: [testng] [2025-05-18 05:02:03,520] [pool-1-thread-12] Initializing /data/stefan/cytosol_08b.oif: [testng] [2025-05-18 05:04:52,927] [pool-1-thread-2] Initializing /data/chris/missegragation-15.oib: [testng] [2025-05-18 05:06:00,289] [pool-1-thread-8] Initializing /data/marc/V0606L.oib: [testng] [2025-05-18 05:06:29,253] [pool-1-thread-2] Initializing /data/brian/FLIP.oib: [testng] [2025-05-18 05:07:11,767] [pool-1-thread-8] Initializing /data/molly/11OCT4.OIF: [testng] [2025-05-18 05:09:13,875] [pool-1-thread-11] Initializing /data/glen/simulstack.oif: [testng] [2025-05-18 05:09:48,029] [pool-1-thread-2] Initializing /data/molly/11OCT2.OIF: [testng] [2025-05-18 05:16:30,425] [pool-1-thread-5] Initializing /data/molly/11OCT6.OIF: [testng] [2025-05-18 05:21:11,587] [pool-1-thread-7] Initializing /data/simon/never_worked.oib: [testng] [2025-05-18 05:21:44,374] [pool-1-thread-7] Initializing /data/dan/outerEV1solu6new.oib: [testng] [2025-05-18 05:22:20,070] [pool-1-thread-7] Initializing /data/glen/singleseqframe.oif: [testng] [2025-05-18 05:27:07,133] [pool-1-thread-7] Initializing /data/pedro/plv-test.oib: [testng] [2025-05-18 05:27:55,200] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV Z 1 after.oib: [testng] [2025-05-18 05:28:45,071] [pool-1-thread-7] Initializing /data/aryeh/PIP2 ESCV control Z 1.oib: [testng] [2025-05-18 05:29:26,388] [pool-1-thread-7] Initializing /data/glen/singlesimul.oif: [testng] [2025-05-18 05:35:32,274] [pool-1-thread-7] Initializing /data/glen/Null file/test change.oif: [testng] [2025-05-18 05:40:37,908] [pool-1-thread-7] Initializing /data/shane/Data Subset/EXX7-10G30% .oib: [testng] [2025-05-18 05:41:14,507] [pool-1-thread-7] Initializing /data/shane/Data Subset/EX5-10 fresh sol.oib: [testng] [2025-05-18 05:41:57,510] [pool-1-thread-7] Initializing /data/jean-claude/villositerat0heurea.oib: [testng] [2025-05-18 05:42:38,567] [pool-1-thread-7] Initializing /data/glen/Null file/test no change.oif: [testng] 05:43:16,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:43:16,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:16,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_05-43-16.log] [testng] 05:43:16,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c62672 - End of configuration. [testng] [2025-05-18 05:46:57,290] [pool-1-thread-3] Initializing /data/johannes/step4.bmp: [testng] [2025-05-18 05:47:10,696] [pool-1-thread-3] Initializing /data/molly/11OCT7.OIF: [testng] [2025-05-18 05:49:23,858] [pool-1-thread-7] Initializing /data/johannes/step2.bmp: [testng] [2025-05-18 05:49:37,026] [pool-1-thread-7] Initializing /data/brian/Kaede15.oib: [testng] [2025-05-18 05:50:11,722] [pool-1-thread-7] Initializing /data/aryeh/BP3 3h ch2.oif: [testng] 06:10:10,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:10:10,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:10:10,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_06-10-10.log] [testng] 06:10:10,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1227aabd - End of configuration. [testng] 06:53:43,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:53:43,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:53:43,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_06-53-43.log] [testng] 06:53:43,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@660c2f9 - End of configuration. [testng] [2025-05-18 07:04:40,794] [pool-1-thread-1] Initializing /data/sten/01.oib: [testng] 07:05:03,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:05:03,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:03,236 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_07-05-03.log] [testng] 07:05:03,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@711112b0 - End of configuration. [testng] [2025-05-18 07:05:24,248] [pool-1-thread-1] Initializing /data/yasunori/series_1.oib: [testng] [2025-05-18 07:06:32,845] [pool-1-thread-1] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oif: [testng] [2025-05-18 07:08:39,336] [pool-1-thread-11] Initializing /data/glen/111407.oif: [testng] [2025-05-18 07:30:18,265] [pool-1-thread-10] Initializing /data/stefan/test-with-stefan071024.oib: [testng] [2025-05-18 07:31:30,141] [pool-1-thread-10] Initializing /data/aryeh/naomi/Brain 2 he1d 1.oib: [testng] 07:31:57,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:31:57,218 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:31:57,219 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_07-31-57.log] [testng] 07:31:57,220 |-INFO in ch.qos.logback.core.sift.SiftProcessor@438aa196 - End of configuration. [testng] [2025-05-18 07:32:17,524] [pool-1-thread-10] Initializing /data/molly/11OCT11.OIF: [testng] [2025-05-18 07:50:45,437] [pool-1-thread-8] Initializing /data/glen/ticket-10092/tbn 02-10-12 D7 DT 8300 1.oif: [testng] [2025-05-18 08:04:15,089] [pool-1-thread-4] Initializing /data/glen/singleseqline.oif: [testng] 08:11:52,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 08:11:52,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:11:52,659 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_08-11-52.log] [testng] 08:11:52,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39fd510 - End of configuration. [testng] [2025-05-18 08:14:15,779] [pool-1-thread-4] Initializing /data/shane/Data Subset/NESTIN_control2.oif: [testng] [2025-05-18 08:21:11,202] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX4-10G40%.oib: [testng] [2025-05-18 08:22:09,334] [pool-1-thread-4] Initializing /data/barbara/Image_with_working_import.oib: [testng] 08:22:10,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 08:22:10,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:22:10,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_08-22-10.log] [testng] 08:22:10,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f9f8df8 - End of configuration. [testng] [2025-05-18 08:22:41,081] [pool-1-thread-4] Initializing /data/ramon/Image_01_01_01_01.oif: [testng] 08:25:34,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 08:25:34,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:25:34,522 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_08-25-34.log] [testng] 08:25:34,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@262aa623 - End of configuration. [testng] [2025-05-18 08:27:15,115] [pool-1-thread-6] Initializing /data/aryeh/061010 plate 1/Image0002_09.oib: [testng] [2025-05-18 08:28:06,853] [pool-1-thread-6] Initializing /data/david/Image0016.oif: [testng] [2025-05-18 08:35:59,075] [pool-1-thread-5] Initializing /data/brian/Rhodamine-PI-1.oib: [testng] [2025-05-18 08:36:39,547] [pool-1-thread-5] Initializing /data/glen/simulstack.oib: [testng] [2025-05-18 08:37:22,633] [pool-1-thread-5] Initializing /data/johannes/step5b.bmp: [testng] [2025-05-18 08:37:32,413] [pool-1-thread-5] Initializing /data/molly/11OCT9.OIF: [testng] [2025-05-18 08:41:29,661] [pool-1-thread-12] Initializing /data/brian/CFP-GFP2.oib: [testng] [2025-05-18 08:42:03,432] [pool-1-thread-12] Initializing /data/jae/Image0001.oib: [testng] [2025-05-18 08:42:20,144] [pool-1-thread-6] Initializing /data/allan/62909#1.oib: [testng] [2025-05-18 08:42:47,398] [pool-1-thread-12] Initializing /data/tom/zseries-test.oib: [testng] [2025-05-18 08:43:07,661] [pool-1-thread-6] Initializing /data/johannes/Image0010/Image0010.oif: [testng] [2025-05-18 08:43:42,202] [pool-1-thread-12] Initializing /data/glen/QuitIJ/06-1728brnc3my.oib: [testng] [2025-05-18 08:43:50,456] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_10.oib: [testng] [2025-05-18 08:44:40,060] [pool-1-thread-3] Initializing /data/brian/lambda02nm.oib: [testng] [2025-05-18 08:44:47,667] [pool-1-thread-12] Initializing /data/glen/LUT issue/Greenredfarred.oif: [testng] [2025-05-18 08:45:13,149] [pool-1-thread-3] Initializing /data/brian/PA-GFP-3.oib: [testng] [2025-05-18 08:45:44,559] [pool-1-thread-4] Initializing /data/qa-17748/Image0079.oib: [testng] [2025-05-18 08:45:54,270] [pool-1-thread-3] Initializing /data/glen/QuitIJ/4202A2chtest.oib: [testng] [2025-05-18 08:46:27,848] [pool-1-thread-4] Initializing /data/shane/Data Subset/EXX6-10G30%.oib: [testng] [2025-05-18 08:46:33,653] [pool-1-thread-3] Initializing /data/brian/Kaede-Neuron-9 405XYZ1.oib: [testng] [2025-05-18 08:47:05,290] [pool-1-thread-4] Initializing /data/jcb/200909024/Sup Fig 2/4.oib: [testng] [2025-05-18 08:47:17,625] [pool-1-thread-3] Initializing /data/glen/15min 200neo lyso SO1.oib: [testng] [2025-05-18 08:47:52,080] [pool-1-thread-4] Initializing /data/johannes/Image0006/Image0006.oif.files/Image0006_Thumb.bmp: [testng] [2025-05-18 08:47:58,911] [pool-1-thread-3] Initializing /data/david/Image0016.oib: [testng] [2025-05-18 08:48:05,328] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_02.oib: [testng] [2025-05-18 08:48:40,312] [pool-1-thread-3] Initializing /data/brian/PA-GFPv-2.oib: [testng] [2025-05-18 08:48:57,690] [pool-1-thread-4] Initializing /data/kay/IM2pg.oib: [testng] [2025-05-18 08:49:30,334] [pool-1-thread-3] Initializing /data/alex/31h_pea3_fgf10_01_1.oif: [testng] [2025-05-18 08:50:09,571] [pool-1-thread-4] Initializing /data/marc/V0606J.oib: [testng] [2025-05-18 08:51:03,594] [pool-1-thread-4] Initializing /data/brian/CagedATP CaG7.oib: [testng] [2025-05-18 08:51:30,156] [pool-1-thread-12] Initializing /data/yoshihito/XY.oib: [testng] [2025-05-18 08:51:49,682] [pool-1-thread-4] Initializing /data/brian/Al488-yoyo1-2.oib: [testng] [2025-05-18 08:52:15,234] [pool-1-thread-12] Initializing /data/johannes/Image0010/Image0010.oif.files/Image0010_Thumb.bmp: [testng] [2025-05-18 08:52:28,962] [pool-1-thread-12] Initializing /data/molly/11OCT3.OIF: [testng] [2025-05-18 09:00:42,339] [pool-1-thread-4] Initializing /data/glen/singleseqframe.oib: [testng] [2025-05-18 09:01:19,606] [pool-1-thread-4] Initializing /data/glen/singlesimul.oib: [testng] [2025-05-18 09:01:48,138] [pool-1-thread-4] Initializing /data/kashif/OIF_V2/Sample_XYZ.oif: [testng] [2025-05-18 09:12:08,595] [pool-1-thread-6] Initializing /data/yoshihito/XY.oif: [testng] [2025-05-18 09:15:04,674] [pool-1-thread-6] Initializing /data/public/imagesc-71616/20220824_4492_cord_dapi__iba568_60x.oib: [testng] [2025-05-18 09:15:39,945] [pool-1-thread-6] Initializing /data/brian/Kaede-Neuron-9XYZ.oib: [testng] [2025-05-18 09:16:15,263] [pool-1-thread-6] Initializing /data/glen/4205basal106072.oif: [testng] [2025-05-18 09:19:38,406] [pool-1-thread-11] Initializing /data/johannes/step3.bmp: [testng] [2025-05-18 09:19:53,154] [pool-1-thread-11] Initializing /data/glen/LUT issue/60x11.oif: [testng] 09:52:07,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:52:07,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:52:07,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_09-52-07.log] [testng] 09:52:07,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10dcf187 - End of configuration. [testng] [2025-05-18 10:07:25,319] [pool-1-thread-4] Initializing /data/brian/Lambda10nm.oib: [testng] [2025-05-18 10:07:59,479] [pool-1-thread-4] Initializing /data/michael/CELL3.oib: [testng] [2025-05-18 10:08:37,045] [pool-1-thread-4] Initializing /data/aryeh/061010 plate 1/Image0002_08.oib: [testng] [2025-05-18 10:09:13,200] [pool-1-thread-4] Initializing /data/johannes/step4b.bmp: [testng] [2025-05-18 10:09:28,050] [pool-1-thread-4] Initializing /data/molly/11OCT10.OIF: [testng] [2025-05-18 10:24:40,955] [pool-1-thread-2] Initializing /data/brian/Caged Glu-3 point.oib: [testng] [2025-05-18 10:25:17,239] [pool-1-thread-2] Initializing /data/johannes/step1.bmp: [testng] [2025-05-18 10:25:29,822] [pool-1-thread-2] Initializing /data/allan/new_30min3_1z2.oib: [testng] [2025-05-18 10:26:06,259] [pool-1-thread-2] Initializing /data/aryeh/061010 plate 1/Image0002_01.oib: [testng] [2025-05-18 10:26:45,508] [pool-1-thread-2] Initializing /data/brian/LILY POLLEN.oib: [testng] [2025-05-18 10:27:19,612] [pool-1-thread-2] Initializing /data/stefan/121206_IHC_Ncad_647_in_515_WT_36hpf_e1.oib: [testng] [2025-05-18 10:27:54,369] [pool-1-thread-2] Initializing /data/aryeh/1h_after_pdt.oib: [testng] 10:28:34,895 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:28:34,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:28:34,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_10-28-34.log] [testng] 10:28:34,896 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23335738 - End of configuration. [testng] [2025-05-18 10:28:54,044] [pool-1-thread-2] Initializing /data/glen/QuitIJ/4202A2chtest.oif: [testng] [2025-05-18 10:41:55,560] [pool-1-thread-8] Initializing /data/kashif/OIF_V1/Sample_XYZ.oif: [testng] [2025-05-18 10:42:14,841] [pool-1-thread-3] Initializing /data/shane/Data Subset/Ex3sol.oif: [testng] [2025-05-18 10:46:31,655] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_06.oib: [testng] [2025-05-18 10:47:06,734] [pool-1-thread-3] Initializing /data/aryeh/control_test.oib: [testng] [2025-05-18 10:47:36,796] [pool-1-thread-10] Initializing /data/monica/Image0056.oif: [testng] [2025-05-18 10:48:11,407] [pool-1-thread-3] Initializing /data/brian/NEURON_TIMELAPS_2.oib: [testng] [2025-05-18 10:48:50,951] [pool-1-thread-3] Initializing /data/aryeh/061010 plate 1/Image0002_04.oib: [testng] [2025-05-18 10:49:27,868] [pool-1-thread-3] Initializing /data/johannes/Image0016/Image0016.oif: [testng] 12:47:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 12:47:53,371 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:47:53,372 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_12-47-53.log] [testng] 12:47:53,372 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74fafcf1 - End of configuration. [testng] 13:16:15,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:16:15,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:16:15,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_13-16-15.log] [testng] 13:16:15,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64497e8d - End of configuration. [testng] 14:32:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 14:32:25,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:32:25,875 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_14-32-25.log] [testng] 14:32:25,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17d7e747 - End of configuration. [testng] 17:12:54,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 17:12:54,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:12:54,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_17-12-54.log] [testng] 17:12:54,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38152a6a - End of configuration. [testng] 18:45:00,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 18:45:00,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:45:00,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_18-45-00.log] [testng] 18:45:00,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44f607d2 - End of configuration. [testng] 19:37:43,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 19:37:43,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:37:43,526 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_19-37-43.log] [testng] 19:37:43,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@688fa02f - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 7632, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1058 minutes 41 seconds Finished: SUCCESS