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Started by upstream project "BIOFORMATS-test-repo" build number 398 originally caused by: Started by upstream project "Trigger" build number 484 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins11608250215150503830.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62881_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:19:26,805 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:19:26,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 05:19:26,806 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:19:26,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:19:26,807 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:19:26,808 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:19:26,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:19:26,808 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:19:26,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:19:26,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:19:26,809 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:19:26,810 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:19:26,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:19:26,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:19:27,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:19:27,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:19:27,021 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:19:27,021 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:19:27,021 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:19:27,022 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:19:27,022 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 05:19:27,023 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 05:19:27,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 214 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-18 05:19:27,032] [main] java.version = 17.0.2 [testng] 05:19:27,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:19:27,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:27,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_05-19-27.log] [testng] 05:19:27,083 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-18 05:19:27,086] [main] testng.directory = /data [testng] [2025-05-18 05:19:27,086] [main] testng.configDirectory = /config [testng] [2025-05-18 05:19:27,095] [main] testng.multiplier = 1.0 [testng] [2025-05-18 05:19:27,096] [main] testng.in-memory = false [testng] [2025-05-18 05:19:27,096] [main] testng.allow-missing = false [testng] [2025-05-18 05:19:27,096] [main] user.language = en [testng] [2025-05-18 05:19:27,096] [main] user.country = ${user.country} [testng] [2025-05-18 05:19:27,096] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-18 06:39:25,859] [main] ---------------------------------------- [testng] [2025-05-18 06:39:25,859] [main] Total files: 14121 [testng] [2025-05-18 06:39:25,860] [main] Scan time: 4798.762 s (339 ms/file) [testng] [2025-05-18 06:39:25,860] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-18 09:14:59,305] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] 09:14:59,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:14:59,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:14:59,306 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_09-14-59.log] [testng] 09:14:59,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f0c24b - End of configuration. [testng] [2025-05-18 09:15:04,058] [pool-1-thread-12] Initializing /data/samples/zser24.stk: [testng] 09:15:04,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:15:04,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:04,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_09-15-04.log] [testng] 09:15:04,059 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23908fe2 - End of configuration. [testng] [2025-05-18 09:15:11,643] [pool-1-thread-11] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] 09:15:11,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:15:11,643 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:11,644 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_09-15-11.log] [testng] 09:15:11,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e089cbe - End of configuration. [testng] [2025-05-18 09:15:23,155] [pool-1-thread-10] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] 09:15:23,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:15:23,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:15:23,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_09-15-23.log] [testng] 09:15:23,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@612b5950 - End of configuration. [testng] [2025-05-18 09:16:18,433] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] 09:16:18,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:16:18,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:18,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_09-16-18.log] [testng] 09:16:18,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59d2344b - End of configuration. [testng] [2025-05-18 09:16:26,955] [pool-1-thread-8] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 09:16:26,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:16:26,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:26,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_09-16-26.log] [testng] 09:16:26,956 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cbb5aae - End of configuration. [testng] [2025-05-18 09:16:32,229] [pool-1-thread-7] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] 09:16:32,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:16:32,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:32,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_09-16-32.log] [testng] 09:16:32,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bb20a9b - End of configuration. [testng] [2025-05-18 09:16:37,701] [pool-1-thread-6] Initializing /data/samples/zserSixteen.stk: [testng] 09:16:37,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:16:37,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:37,702 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_09-16-37.log] [testng] 09:16:37,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e60657b - End of configuration. [testng] [2025-05-18 09:16:46,863] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] 09:16:46,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:16:46,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:16:46,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_09-16-46.log] [testng] 09:16:46,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb0a4bc - End of configuration. [testng] [2025-05-18 09:17:58,200] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] 09:17:58,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:17:58,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:17:58,201 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_09-17-58.log] [testng] 09:17:58,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3386525a - End of configuration. [testng] [2025-05-18 09:18:03,254] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] 09:18:03,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:18:03,255 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:18:03,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_09-18-03.log] [testng] 09:18:03,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d651253 - End of configuration. [testng] [2025-05-18 09:18:09,983] [pool-1-thread-2] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] 09:18:09,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:18:09,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:18:09,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_09-18-09.log] [testng] 09:18:09,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@672a1ece - End of configuration. [testng] [2025-05-18 09:19:23,123] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2025-05-18 09:19:32,146] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2025-05-18 09:19:39,858] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-05-18 09:19:49,917] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-05-18 09:20:58,172] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 09:21:03,918] [pool-1-thread-7] Initializing /data/heiko/sample_2x2.stk: [testng] [2025-05-18 09:21:12,519] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-05-18 09:22:13,304] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 09:22:32,447] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 09:22:50,857] [pool-1-thread-4] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-05-18 09:22:58,963] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2025-05-18 09:23:07,060] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-05-18 09:23:20,671] [pool-1-thread-6] Used files list does not include base file [testng] [2025-05-18 09:23:20,673] [pool-1-thread-2] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-05-18 09:23:31,493] [pool-1-thread-11] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 09:24:01,517] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-05-18 09:24:10,615] [pool-1-thread-4] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-05-18 09:24:34,529] [pool-1-thread-8] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-05-18 09:24:45,161] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2025-05-18 09:24:57,092] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2025-05-18 09:25:04,053] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2025-05-18 09:25:26,339] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-05-18 09:25:31,216] [pool-1-thread-2] Used files list does not include base file [testng] [2025-05-18 09:25:38,254] [pool-1-thread-11] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-05-18 09:25:58,865] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 09:26:25,547] [pool-1-thread-4] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-05-18 09:26:36,399] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2025-05-18 09:27:03,967] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2025-05-18 09:27:31,129] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2025-05-18 09:27:52,549] [pool-1-thread-2] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-05-18 09:28:28,657] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-05-18 09:29:10,339] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-05-18 09:29:21,698] [pool-1-thread-11] Used files list does not include base file [testng] [2025-05-18 09:29:33,162] [pool-1-thread-4] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2025-05-18 09:30:41,851] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 09:32:00,685] [pool-1-thread-4] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-05-18 09:32:55,208] [pool-1-thread-4] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-05-18 09:33:49,068] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 09:39:26,672] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-18 09:42:36,439] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2025-05-18 09:43:37,292] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2025-05-18 09:44:34,874] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-05-18 09:45:17,442] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-05-18 09:45:36,473] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 09:48:36,331] [pool-1-thread-2] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2025-05-18 09:49:35,890] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2025-05-18 09:52:26,609] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-05-18 10:08:32,392] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-18 10:10:15,872] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-05-18 10:12:18,245] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2025-05-18 10:12:29,602] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2025-05-18 10:13:31,215] [pool-1-thread-8] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2025-05-18 10:15:38,495] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2025-05-18 10:16:33,229] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2025-05-18 10:16:46,580] [pool-1-thread-8] Used files list does not include base file [testng] [2025-05-18 10:17:16,699] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2025-05-18 10:17:29,981] [pool-1-thread-2] Used files list does not include base file [testng] [2025-05-18 10:17:30,131] [pool-1-thread-6] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2025-05-18 10:18:22,851] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2025-05-18 10:18:33,086] [pool-1-thread-6] Used files list does not include base file [testng] [2025-05-18 10:19:20,498] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 10:20:20,021] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 10:21:00,095] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-05-18 10:21:53,372] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] 10:21:55,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:21:55,687 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:21:55,688 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_10-21-55.log] [testng] 10:21:55,688 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f4fed40 - End of configuration. [testng] [2025-05-18 10:23:04,081] [pool-1-thread-1] Initializing /data/samples/10xcalib.stk: [testng] [2025-05-18 10:23:41,912] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 10:24:17,859] [pool-1-thread-1] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2025-05-18 10:24:37,650] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] 10:24:39,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:24:39,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:24:39,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_10-24-39.log] [testng] 10:24:39,910 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14828a9e - End of configuration. [testng] [2025-05-18 10:25:37,818] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish4_w1FRET_t1.TIF: [testng] 10:55:22,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:55:22,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:55:22,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_10-55-22.log] [testng] 10:55:22,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f89aaa8 - End of configuration. [testng] [2025-05-18 11:02:21,932] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-05-18 11:06:15,576] [pool-1-thread-8] Initializing /data/samples/zseries.stk: [testng] [2025-05-18 11:07:09,333] [pool-1-thread-8] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-05-18 11:07:29,001] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2025-05-18 11:07:42,921] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-05-18 11:08:39,620] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-05-18 11:08:55,300] [pool-1-thread-1] Used files list does not include base file [testng] [2025-05-18 11:08:59,735] [pool-1-thread-6] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2025-05-18 11:09:23,910] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish2_w1FRET_s1_t1.TIF: [testng] 11:10:12,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 11:10:12,123 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:10:12,124 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_11-10-12.log] [testng] 11:10:12,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b1d1a38 - End of configuration. [testng] [2025-05-18 11:11:42,425] [pool-1-thread-6] Initializing /data/thomas/t_test2001.tif: [testng] [2025-05-18 11:12:36,114] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2025-05-18 11:16:23,328] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2025-05-18 11:16:32,460] [pool-1-thread-1] Used files list does not include base file [testng] [2025-05-18 11:17:23,781] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 11:18:16,057] [pool-1-thread-8] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2025-05-18 11:18:41,023] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2025-05-18 11:21:45,535] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 11:22:42,291] [pool-1-thread-1] Initializing /data/dave/Z Series.stk: [testng] [2025-05-18 11:23:29,670] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 11:25:15,592] [pool-1-thread-8] Initializing /data/cumol-test-series/23.001: [testng] [2025-05-18 11:25:44,610] [pool-1-thread-1] Initializing /data/samples/10xcalib.tif: [testng] [2025-05-18 11:26:30,269] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-18 11:29:46,543] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 11:51:02,173] [pool-1-thread-6] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2025-05-18 11:53:43,470] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-18 11:58:16,803] [pool-1-thread-4] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-05-18 11:59:13,081] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2025-05-18 12:01:14,988] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2025-05-18 12:03:35,890] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-05-18 12:04:30,123] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 12:08:51,355] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-05-18 12:10:20,708] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2025-05-18 12:10:31,029] [pool-1-thread-4] Used files list does not include base file [testng] [2025-05-18 12:10:31,097] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-18 12:12:41,653] [pool-1-thread-8] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-05-18 12:15:01,137] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2025-05-18 12:15:59,359] [pool-1-thread-8] Initializing /data/david/tl4.tif: [testng] [2025-05-18 12:17:07,587] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-05-18 12:17:18,054] [pool-1-thread-8] Used files list does not include base file [testng] [2025-05-18 12:17:58,328] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish10_w1FRET_s1_t1.TIF: [testng] [2025-05-18 12:20:04,697] [pool-1-thread-8] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2025-05-18 12:21:55,149] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2025-05-18 12:24:37,750] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-05-18 12:25:32,171] [pool-1-thread-5] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-05-18 12:26:51,783] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2025-05-18 12:27:32,789] [pool-1-thread-8] Initializing /data/steve/Experiment2.tif: [testng] [2025-05-18 12:27:54,850] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 12:28:39,370] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 12:32:30,001] [pool-1-thread-3] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-05-18 12:33:20,048] [pool-1-thread-3] Initializing 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[pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-05-18 12:41:11,449] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 12:43:48,840] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-05-18 12:47:22,671] [pool-1-thread-7] Initializing /data/ascb/golgi marker.tif: [testng] [2025-05-18 12:48:21,514] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-05-18 12:51:41,110] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-05-18 12:52:36,449] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 12:54:07,043] [pool-1-thread-1] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2025-05-18 12:55:04,965] [pool-1-thread-1] Initializing /data/steve/Experiment2.stk: [testng] [2025-05-18 12:55:57,872] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 12:58:16,000] [pool-1-thread-9] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2025-05-18 12:59:21,616] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 13:13:32,381] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-05-18 13:15:04,402] [pool-1-thread-8] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-05-18 13:15:15,066] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 13:16:30,348] [pool-1-thread-8] Initializing /data/josh/2101to400bstk.stk: [testng] 13:20:57,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 13:20:57,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:20:57,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_13-20-57.log] [testng] 13:20:57,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33f1bbc5 - End of configuration. [testng] [2025-05-18 13:24:37,399] [pool-1-thread-6] Initializing /data/ascb/golgi marker 2.tif: [testng] [2025-05-18 13:25:31,832] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-05-18 13:26:30,350] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_Vec_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-05-18 13:27:46,138] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-05-18 13:30:54,795] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 13:33:22,832] [pool-1-thread-6] Initializing /data/samples/diatoms3d.stk: [testng] [2025-05-18 13:34:22,154] [pool-1-thread-6] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-05-18 13:36:42,298] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 13:39:48,131] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2025-05-18 13:40:38,139] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2025-05-18 13:41:16,903] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2025-05-18 13:41:51,768] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] [2025-05-18 13:45:10,122] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 13:46:12,468] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] 13:46:44,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:46:44,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:46:44,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_13-46-44.log] [testng] 13:46:44,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d5800b - End of configuration. [testng] [2025-05-18 13:46:57,212] [pool-1-thread-9] Initializing /data/jae/RGB_s34.tif: [testng] [2025-05-18 13:48:13,759] [pool-1-thread-9] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2025-05-18 13:49:18,435] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] [2025-05-18 13:57:53,759] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-05-18 14:00:11,405] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-18 14:06:57,912] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-05-18 14:07:43,964] [pool-1-thread-1] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-05-18 14:07:57,731] [pool-1-thread-1] Used files list does not include base file [testng] [2025-05-18 14:12:42,470] [pool-1-thread-2] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2025-05-18 14:14:28,194] [pool-1-thread-1] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2025-05-18 14:15:15,495] [pool-1-thread-6] Initializing /data/grant/XYZ_Image.STK: [testng] [2025-05-18 14:16:04,439] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 14:17:02,673] [pool-1-thread-6] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-05-18 14:18:00,387] [pool-1-thread-6] Initializing /data/ascb/mt aim.tif: [testng] [2025-05-18 14:18:09,364] [pool-1-thread-7] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2025-05-18 14:19:06,862] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-05-18 14:19:31,557] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2025-05-18 14:19:38,329] [pool-1-thread-7] Used files list does not include base file [testng] [2025-05-18 14:20:01,423] [pool-1-thread-6] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-05-18 14:21:25,782] [pool-1-thread-7] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-05-18 14:22:21,223] [pool-1-thread-7] Initializing /data/doil/001-23 dapi.stk: [testng] [2025-05-18 14:26:37,872] [pool-1-thread-8] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-05-18 14:27:25,460] [pool-1-thread-8] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2025-05-18 14:28:27,328] [pool-1-thread-8] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2025-05-18 14:29:57,940] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-05-18 14:30:53,115] [pool-1-thread-7] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-05-18 14:33:47,257] [pool-1-thread-8] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-05-18 14:34:34,912] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-05-18 14:39:54,497] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-05-18 14:42:04,332] [pool-1-thread-5] Initializing /data/ascb/RNA dye MT.tif: [testng] [2025-05-18 14:43:18,983] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-05-18 14:44:58,281] [pool-1-thread-6] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2025-05-18 14:47:02,304] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-05-18 14:47:15,160] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-18 14:50:03,747] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish7_w1FRET_s1_t1.TIF: [testng] [2025-05-18 14:54:09,256] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2025-05-18 14:58:02,921] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] [2025-05-18 15:05:59,619] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-05-18 15:07:03,100] [pool-1-thread-5] Initializing /data/alex/Selected FITC.stk: [testng] [2025-05-18 15:07:47,806] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2025-05-18 15:08:39,160] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2025-05-18 15:09:22,993] [pool-1-thread-5] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-05-18 15:10:14,881] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2025-05-18 15:11:01,762] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 15:17:57,337] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2025-05-18 15:18:40,068] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-05-18 15:19:54,999] [pool-1-thread-4] Initializing /data/jacek/YFP2trans.tif: [testng] [2025-05-18 15:20:45,351] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2025-05-18 15:21:29,137] [pool-1-thread-4] Initializing /data/jerome/deconv.STK: [testng] [2025-05-18 15:22:16,893] [pool-1-thread-4] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2025-05-18 15:25:34,261] [pool-1-thread-4] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-05-18 15:26:24,402] [pool-1-thread-4] Initializing /data/josh/2101to400astk.stk: [testng] [2025-05-18 15:36:34,956] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-05-18 15:37:31,349] [pool-1-thread-4] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-05-18 15:40:24,278] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2025-05-18 15:41:18,403] [pool-1-thread-4] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-18 15:43:00,851] [pool-1-thread-3] Initializing /data/qa-16887/m-01.tif: [testng] [2025-05-18 15:43:45,798] [pool-1-thread-4] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2025-05-18 15:44:16,533] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-05-18 15:44:28,043] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 15:45:24,822] [pool-1-thread-2] Initializing /data/qa-16915/m-04.tif: [testng] [2025-05-18 15:45:41,477] [pool-1-thread-4] Initializing /data/qa-16915/m-04-561.tif: [testng] [2025-05-18 15:46:30,715] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-05-18 15:47:03,253] [pool-1-thread-2] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-05-18 15:47:13,291] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-05-18 15:49:35,321] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-05-18 15:51:26,984] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-05-18 15:51:44,835] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-18 15:53:51,981] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] 15:55:22,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 15:55:22,912 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:55:22,913 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_15-55-22.log] [testng] 15:55:22,914 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eab197e - End of configuration. [testng] [2025-05-18 16:01:37,872] [pool-1-thread-5] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2025-05-18 16:03:45,570] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-05-18 16:06:44,698] [pool-1-thread-5] Initializing /data/josh/2101to600e.stk: [testng] [2025-05-18 16:15:31,753] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2025-05-18 16:15:49,277] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-18 16:21:02,006] [pool-1-thread-12] Initializing /data/thomas/test.tif: [testng] [2025-05-18 16:22:28,082] [pool-1-thread-12] Initializing /data/chris/Stream-2(partial).stk: [testng] [2025-05-18 16:25:38,366] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-05-18 16:25:55,758] [pool-1-thread-12] Used files list does not include base file [testng] [2025-05-18 16:26:08,908] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2025-05-18 16:27:22,794] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_Vec_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-05-18 16:36:10,961] [pool-1-thread-12] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-05-18 16:38:38,715] [pool-1-thread-11] Initializing /data/aaron/metamorph.stk: [testng] [2025-05-18 16:39:13,042] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2025-05-18 16:39:48,580] [pool-1-thread-11] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2025-05-18 16:40:38,797] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2025-05-18 16:41:56,577] [pool-1-thread-12] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2025-05-18 16:46:37,413] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 16:47:58,354] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2025-05-18 16:48:14,675] [pool-1-thread-11] Used files list does not include base file [testng] [2025-05-18 16:49:21,028] [pool-1-thread-12] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-05-18 16:52:43,679] [pool-1-thread-12] Initializing /data/grant/X.STK: [testng] [2025-05-18 16:54:49,419] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2025-05-18 16:55:01,642] [pool-1-thread-2] Initializing /data/qa-16915/m-01.tif: [testng] [2025-05-18 16:56:17,824] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-18 16:57:30,330] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-18 16:58:17,468] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-18 17:00:16,611] [pool-1-thread-2] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2025-05-18 17:01:30,069] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-18 17:08:43,338] [pool-1-thread-9] Initializing /data/josh/2101to600f.stk: [testng] 17:11:31,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 17:11:31,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:11:31,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_17-11-31.log] [testng] 17:11:31,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34dc185 - End of configuration. [testng] [2025-05-18 17:25:22,390] [pool-1-thread-9] Initializing /data/heiko/sample_3x3.stk: [testng] [2025-05-18 17:26:38,696] [pool-1-thread-9] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-05-18 17:40:49,502] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] 17:45:48,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 17:45:48,922 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:45:48,923 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_17-45-48.log] [testng] 17:45:48,923 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2918eab8 - End of configuration. [testng] [2025-05-18 17:52:41,629] [pool-1-thread-12] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-05-18 17:53:47,390] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2025-05-18 17:54:09,671] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-05-18 17:55:11,934] [pool-1-thread-3] Initializing /data/qa-16915/m-02.tif: [testng] [2025-05-18 17:56:18,886] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2025-05-18 17:57:46,163] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR5_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-18 18:04:41,463] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2025-05-18 18:05:39,749] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] 18:11:01,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 18:11:01,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 18:11:01,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_18-11-01.log] [testng] 18:11:01,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59a73c52 - End of configuration. [testng] 19:01:37,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 19:01:37,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:01:37,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_19-01-37.log] [testng] 19:01:37,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@157e8d38 - End of configuration. [testng] 19:30:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 19:30:35,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:30:35,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_19-30-35.log] [testng] 19:30:35,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1cf692 - End of configuration. [testng] 23:20:27,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 23:20:27,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:20:27,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_23-20-27.log] [testng] 23:20:27,610 |-INFO in ch.qos.logback.core.sift.SiftProcessor@678cdc8 - End of configuration. [testng] 23:23:04,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 23:23:04,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 23:23:04,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_23-23-04.log] [testng] 23:23:04,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2de0349a - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1083 minutes 42 seconds Finished: SUCCESS