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Started by upstream project "BIOFORMATS-test-repo" build number 398 originally caused by: Started by upstream project "Trigger" build number 484 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@14 [BIOFORMATS-test-folder@14] $ /bin/bash -xe /tmp/jenkins15194797177122831516.sh + '[' zeiss-tiff = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62925_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 08:57:02,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 08:57:02,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 08:57:02,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:57:02,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 08:57:02,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 08:57:02,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 08:57:02,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 08:57:02,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:57:02,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 08:57:02,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 08:57:02,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 08:57:02,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 08:57:02,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 08:57:02,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 08:57:02,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 08:57:02,408 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 08:57:02,414 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 08:57:02,414 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 08:57:02,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 08:57:02,414 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 08:57:02,414 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 08:57:02,415 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 08:57:02,415 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 192 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-18 08:57:02,424] [main] java.version = 17.0.2 [testng] 08:57:02,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 08:57:02,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:57:02,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_08-57-02.log] [testng] 08:57:02,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-18 08:57:02,474] [main] testng.directory = /data [testng] [2025-05-18 08:57:02,475] [main] testng.configDirectory = /config [testng] [2025-05-18 08:57:02,483] [main] testng.multiplier = 1.0 [testng] [2025-05-18 08:57:02,484] [main] testng.in-memory = false [testng] [2025-05-18 08:57:02,484] [main] testng.allow-missing = false [testng] [2025-05-18 08:57:02,484] [main] user.language = en [testng] [2025-05-18 08:57:02,484] [main] user.country = ${user.country} [testng] [2025-05-18 08:57:02,484] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-18 09:16:20,058] [main] ---------------------------------------- [testng] [2025-05-18 09:16:20,058] [main] Total files: 15735 [testng] [2025-05-18 09:16:20,058] [main] Scan time: 1157.574 s (73 ms/file) [testng] [2025-05-18 09:16:20,059] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 125 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-18 09:42:49,861] [pool-1-thread-1] Initializing /data/converted/susan/BY4741NQ2.tif: [testng] 09:42:49,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:42:49,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:42:49,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_09-42-49.log] [testng] 09:42:49,863 |-INFO in ch.qos.logback.core.sift.SiftProcessor@398dbc77 - End of configuration. [testng] [2025-05-18 09:43:04,120] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif: [testng] 09:43:04,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:43:04,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:04,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_09-43-04.log] [testng] 09:43:04,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277d0f1b - End of configuration. [testng] [2025-05-18 09:43:16,866] [pool-1-thread-11] Initializing /data/converted/converted/2chzt.tif: [testng] 09:43:16,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:43:16,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:16,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_09-43-16.log] [testng] 09:43:16,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6816a3f4 - End of configuration. [testng] [2025-05-18 09:43:29,582] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif: [testng] 09:43:29,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:43:29,582 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:29,583 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_09-43-29.log] [testng] 09:43:29,584 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4005db3c - End of configuration. [testng] [2025-05-18 09:43:44,817] [pool-1-thread-9] Initializing /data/converted/joseph/E-2009-0001a.tif: [testng] 09:43:44,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:43:44,817 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:44,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_09-43-44.log] [testng] 09:43:44,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a270d4 - End of configuration. [testng] [2025-05-18 09:43:57,587] [pool-1-thread-8] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif: [testng] 09:43:57,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:43:57,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:43:57,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_09-43-57.log] [testng] 09:43:57,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54b3bccf - End of configuration. [testng] [2025-05-18 09:44:11,228] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif: [testng] 09:44:11,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:44:11,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:44:11,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_09-44-11.log] [testng] 09:44:11,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18a4f4bd - End of configuration. [testng] [2025-05-18 09:44:25,118] [pool-1-thread-6] Initializing /data/converted/rolf/example_2-2010_11_25.tif: [testng] 09:44:25,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:44:25,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:44:25,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_09-44-25.log] [testng] 09:44:25,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a50520 - End of configuration. [testng] [2025-05-18 09:44:37,620] [pool-1-thread-5] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif: [testng] 09:44:37,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:44:37,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:44:37,621 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_09-44-37.log] [testng] 09:44:37,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61d845bb - End of configuration. [testng] [2025-05-18 09:44:51,509] [pool-1-thread-4] Initializing /data/converted/vladan/vladan.tif: [testng] 09:44:51,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:44:51,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:44:51,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_09-44-51.log] [testng] 09:44:51,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c09ad03 - End of configuration. [testng] [2025-05-18 09:45:00,639] [pool-1-thread-3] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif: [testng] 09:45:00,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:45:00,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:00,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_09-45-00.log] [testng] 09:45:00,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66ffc860 - End of configuration. [testng] [2025-05-18 09:45:08,861] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif: [testng] 09:45:08,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:45:08,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:45:08,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_09-45-08.log] [testng] 09:45:08,862 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6146994 - End of configuration. [testng] [2025-05-18 09:49:16,577] [pool-1-thread-6] Initializing /data/scott/Slide133-08.tif: [testng] [2025-05-18 09:49:29,167] [pool-1-thread-1] Initializing /data/converted/dietmar/137.tif: [testng] [2025-05-18 09:52:30,422] [pool-1-thread-6] Initializing /data/converted/sebastien/F1.tif: [testng] [2025-05-18 10:14:39,895] [pool-1-thread-5] Initializing /data/converted/strand/2Colors1Plane.tif: [testng] [2025-05-18 10:19:09,925] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif: [testng] [2025-05-18 10:20:55,837] [pool-1-thread-5] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif: [testng] [2025-05-18 10:25:15,899] [pool-1-thread-5] Initializing /data/converted/joseph/E-2009-0004.tif: [testng] [2025-05-18 10:28:29,702] [pool-1-thread-4] Initializing /data/converted/karsten/Bild1.tif: [testng] [2025-05-18 10:33:02,645] [pool-1-thread-4] Initializing /data/converted/michel/c.tif: [testng] [2025-05-18 10:35:55,743] [pool-1-thread-7] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif: [testng] [2025-05-18 10:37:27,517] [pool-1-thread-4] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif: [testng] [2025-05-18 10:39:01,848] [pool-1-thread-10] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif: [testng] [2025-05-18 10:40:10,246] [pool-1-thread-12] Initializing /data/converted/dietmar/dapi-texasred-0015.tif: [testng] [2025-05-18 10:42:09,879] [pool-1-thread-10] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif: [testng] [2025-05-18 10:42:59,396] [pool-1-thread-1] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif: [testng] [2025-05-18 10:44:13,289] [pool-1-thread-2] Initializing /data/converted/karsten/Bild2.tif: [testng] [2025-05-18 10:48:16,923] [pool-1-thread-2] Initializing /data/converted/othmar/z-stack.tif: [testng] [2025-05-18 10:52:53,539] [pool-1-thread-9] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif: [testng] [2025-05-18 10:54:15,450] [pool-1-thread-8] Initializing /data/converted/monica/Monica_elegans_movie.tif: [testng] [2025-05-18 10:59:24,243] [pool-1-thread-3] Initializing /data/converted/othmar/mozaic.tif: [testng] [2025-05-18 11:01:08,084] [pool-1-thread-10] Initializing /data/converted/sebastien/test.tif: [testng] [2025-05-18 11:13:08,985] [pool-1-thread-6] Initializing /data/converted/dietmar/138.tif: [testng] [2025-05-18 11:19:07,602] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif: [testng] [2025-05-18 11:20:15,169] [pool-1-thread-1] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif: [testng] [2025-05-18 11:24:55,418] [pool-1-thread-7] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif: [testng] [2025-05-18 11:25:26,630] [pool-1-thread-3] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif: [testng] [2025-05-18 11:26:04,663] [pool-1-thread-5] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif: [testng] [2025-05-18 11:27:51,125] [pool-1-thread-3] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif: [testng] [2025-05-18 11:29:45,268] [pool-1-thread-5] Initializing /data/converted/nicolas/image.tif: [testng] [2025-05-18 11:32:20,181] [pool-1-thread-5] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif: [testng] [2025-05-18 11:35:59,098] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif: [testng] [2025-05-18 11:47:22,780] [pool-1-thread-4] Initializing /data/converted/thomas/test_axiocam_3_1.tif: [testng] [2025-05-18 11:48:00,893] [pool-1-thread-1] Initializing /data/converted/kelsey/1300x1030BW.tif: [testng] [2025-05-18 11:50:40,050] [pool-1-thread-1] Initializing /data/converted/converted/2chz.tif: [testng] [2025-05-18 11:51:00,713] [pool-1-thread-4] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif: [testng] [2025-05-18 11:56:23,847] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif: [testng] [2025-05-18 12:01:55,561] [pool-1-thread-6] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif: [testng] 12:03:00,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 12:03:00,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:03:00,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_12-03-00.log] [testng] 12:03:00,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478ad4f4 - End of configuration. [testng] [2025-05-18 12:10:20,044] [pool-1-thread-12] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif: [testng] [2025-05-18 12:12:55,450] [pool-1-thread-1] Initializing /data/scott/Slide133-11.tif: [testng] [2025-05-18 12:15:40,596] [pool-1-thread-1] Initializing /data/scott/Slide133-01.tif: [testng] [2025-05-18 12:16:50,863] [pool-1-thread-4] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif: [testng] [2025-05-18 12:18:33,648] [pool-1-thread-1] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif: [testng] [2025-05-18 12:19:23,056] [pool-1-thread-7] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif: [testng] [2025-05-18 12:24:54,498] [pool-1-thread-2] Initializing /data/converted/michel/d.tif: [testng] [2025-05-18 12:26:55,374] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif: [testng] [2025-05-18 12:27:26,462] [pool-1-thread-1] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif: [testng] [2025-05-18 12:28:25,347] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif: [testng] [2025-05-18 12:34:13,241] [pool-1-thread-12] Initializing /data/converted/jeffrey/750-30-03.tif: [testng] [2025-05-18 12:36:07,336] [pool-1-thread-7] Initializing /data/converted/eirinn/demo-tile.tif: [testng] [2025-05-18 12:38:23,876] [pool-1-thread-12] Initializing /data/converted/lior/live+cf5b.tif: [testng] [2025-05-18 12:41:25,580] [pool-1-thread-7] Initializing /data/converted/markus/HighSpeedParas.tif: [testng] [2025-05-18 12:44:30,161] [pool-1-thread-12] Initializing /data/converted/converted/mri-stack.tif: [testng] [2025-05-18 12:47:41,155] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif: [testng] [2025-05-18 12:53:06,708] [pool-1-thread-10] Initializing /data/converted/darren/section0001_w1.tif: [testng] [2025-05-18 12:56:10,974] [pool-1-thread-10] Initializing /data/converted/converted/damian.tif: [testng] [2025-05-18 12:59:22,386] [pool-1-thread-10] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif: [testng] [2025-05-18 13:06:25,834] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif: [testng] 13:07:53,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 13:07:53,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:07:53,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_13-07-53.log] [testng] 13:07:53,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c33afd4 - End of configuration. [testng] [2025-05-18 13:09:47,980] [pool-1-thread-1] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif: [testng] 13:18:30,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 13:18:30,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:18:30,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_13-18-30.log] [testng] 13:18:30,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7131ddc2 - End of configuration. [testng] [2025-05-18 13:23:46,212] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif: [testng] 13:24:19,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 13:24:19,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 13:24:19,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_13-24-19.log] [testng] 13:24:19,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40121040 - End of configuration. [testng] [2025-05-18 13:26:09,881] [pool-1-thread-10] Initializing /data/converted/rolf/example_1-2010_11_25.tif: [testng] [2025-05-18 13:26:37,503] [pool-1-thread-5] Initializing /data/samples/mri-stack/mri-stack.tif: [testng] [2025-05-18 13:29:27,576] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif: [testng] [2025-05-18 13:29:40,201] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif: [testng] [2025-05-18 13:30:44,313] [pool-1-thread-11] Initializing /data/converted/karsten/247096n3s3s9.tif: [testng] [2025-05-18 13:37:50,258] [pool-1-thread-12] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif: [testng] [2025-05-18 13:40:41,410] [pool-1-thread-12] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif: [testng] [2025-05-18 13:41:11,542] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif: [testng] [2025-05-18 13:45:18,495] [pool-1-thread-11] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif: [testng] [2025-05-18 13:46:41,621] [pool-1-thread-9] Initializing /data/converted/michel/a.tif: [testng] [2025-05-18 13:47:59,312] [pool-1-thread-11] Initializing /data/converted/stephan/notok1.tif: [testng] [2025-05-18 13:49:37,357] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif: [testng] [2025-05-18 14:00:17,844] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif: [testng] [2025-05-18 14:01:12,141] [pool-1-thread-11] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif: [testng] [2025-05-18 14:14:49,622] [pool-1-thread-5] Initializing /data/converted/markus/Long_TL_CElegans.tif: [testng] [2025-05-18 14:17:53,449] [pool-1-thread-10] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif: [testng] [2025-05-18 14:20:50,806] [pool-1-thread-1] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif: [testng] 14:29:30,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 14:29:30,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 14:29:30,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_14-29-30.log] [testng] 14:29:30,500 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30003366 - End of configuration. [testng] [2025-05-18 14:32:52,886] [pool-1-thread-3] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif: [testng] [2025-05-18 14:40:52,964] [pool-1-thread-9] Initializing /data/converted/david/snap-181518-0001.tif: [testng] [2025-05-18 14:44:15,867] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif: [testng] [2025-05-18 14:46:20,535] [pool-1-thread-3] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif: [testng] [2025-05-18 14:48:24,519] [pool-1-thread-6] Initializing /data/converted/darren/section0002_w1.tif: [testng] [2025-05-18 14:50:24,150] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif: [testng] [2025-05-18 14:50:57,180] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama.tif: [testng] [2025-05-18 14:52:07,416] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif: [testng] [2025-05-18 14:54:55,537] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif: [testng] [2025-05-18 15:01:41,192] [pool-1-thread-1] Initializing /data/converted/kelsey/432x342BW.tif: [testng] 15:02:31,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 15:02:31,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:02:31,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_15-02-31.log] [testng] 15:02:31,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@242b075c - End of configuration. [testng] [2025-05-18 15:03:02,855] [pool-1-thread-10] Initializing /data/converted/markus/30channels_exposure-series.tif: [testng] [2025-05-18 15:04:29,965] [pool-1-thread-1] Initializing /data/converted/dan/adultnr1.tif: [testng] [2025-05-18 15:10:26,388] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif: [testng] [2025-05-18 15:17:04,919] [pool-1-thread-10] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif: [testng] 15:20:29,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 15:20:29,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:20:29,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_15-20-29.log] [testng] 15:20:29,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fdc849f - End of configuration. [testng] [2025-05-18 15:21:30,177] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif: [testng] [2025-05-18 15:22:16,373] [pool-1-thread-12] Initializing /data/scott/Slide133-04.tif: [testng] [2025-05-18 15:24:35,581] [pool-1-thread-12] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif: [testng] [2025-05-18 15:28:10,288] [pool-1-thread-10] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif: [testng] [2025-05-18 15:29:02,957] [pool-1-thread-12] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif: [testng] [2025-05-18 15:30:01,234] [pool-1-thread-9] Initializing /data/othmar/mozaic.tif: [testng] [2025-05-18 15:34:46,701] [pool-1-thread-3] Initializing /data/converted/michel/e.tif: [testng] [2025-05-18 15:38:19,328] [pool-1-thread-4] Initializing /data/converted/michel/b.tif: [testng] [2025-05-18 15:41:34,772] [pool-1-thread-3] Initializing /data/converted/rachel/40K 30s A1.tif: [testng] [2025-05-18 15:41:46,401] [pool-1-thread-11] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif: [testng] [2025-05-18 15:42:45,652] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif: [testng] [2025-05-18 15:43:06,175] [pool-1-thread-11] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif: [testng] [2025-05-18 15:45:51,277] [pool-1-thread-4] Initializing /data/converted/kelsey/650x514BW.tif: [testng] [2025-05-18 15:46:06,500] [pool-1-thread-3] Initializing /data/converted/dan/zstack_convalaria.tif: [testng] [2025-05-18 15:49:07,553] [pool-1-thread-4] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif: [testng] [2025-05-18 15:50:38,169] [pool-1-thread-3] Initializing /data/converted/lior/live+cf2b.tif: [testng] [2025-05-18 15:54:35,685] [pool-1-thread-4] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif: [testng] 15:56:17,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:56:17,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:56:17,781 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_15-56-17.log] [testng] 15:56:17,782 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37ebc6ef - End of configuration. [testng] [2025-05-18 15:58:41,466] [pool-1-thread-4] Initializing /data/converted/rachel/40K 30s A2.tif: [testng] [2025-05-18 15:58:56,601] [pool-1-thread-3] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif: [testng] [2025-05-18 15:59:59,668] [pool-1-thread-9] Initializing /data/converted/miso/Aufnahme-184058-0002.tif: [testng] [2025-05-18 16:03:34,134] [pool-1-thread-6] Initializing /data/dorai/F_ZImage10_(X10)_C.tif: [testng] [2025-05-18 16:04:09,003] [pool-1-thread-9] Initializing /data/converted/converted/damian-compressed.tif: [testng] [2025-05-18 16:04:40,712] [pool-1-thread-4] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif: [testng] 16:33:46,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 16:33:46,996 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 16:33:46,997 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_16-33-46.log] [testng] 16:33:46,997 |-INFO in ch.qos.logback.core.sift.SiftProcessor@341ab8f9 - End of configuration. [testng] 17:05:26,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 17:05:26,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:05:26,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_17-05-26.log] [testng] 17:05:26,902 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eed6acc - End of configuration. [testng] 17:54:12,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 17:54:12,587 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:54:12,587 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_17-54-12.log] [testng] 17:54:12,588 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51ff3f55 - End of configuration. [testng] 17:55:25,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 17:55:25,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:55:25,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_17-55-25.log] [testng] 17:55:25,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c19c369 - End of configuration. [testng] 21:48:52,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 21:48:52,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:48:52,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_21-48-52.log] [testng] 21:48:52,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375d721a - End of configuration. [testng] 21:56:12,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 21:56:12,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 21:56:12,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_21-56-12.log] [testng] 21:56:12,298 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26f29ee5 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 6625, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 779 minutes 15 seconds Finished: SUCCESS