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Started by upstream project "BIOFORMATS-test-repo" build number 44 originally caused by: Started by upstream project "Trigger" build number 51 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins10669088745096290903.sh + '[' sxm = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6294_merge_ci -v /uod/idr/repos/curated/sxm:/data -v /uod/idr-scratch/merge-ci/curated/sxm:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:04:12,565 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:04:12,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:04:12,566 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:12,567 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:04:12,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:04:12,568 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:04:12,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:04:12,568 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:12,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:04:12,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:04:12,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:04:12,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:04:12,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:04:12,733 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:04:12,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:04:12,757 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:04:12,764 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:04:12,764 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:04:12,764 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:04:12,764 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:04:12,764 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:04:12,765 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:04:12,765 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 196 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-25 02:04:12,774] [main] java.version = 21 [testng] 02:04:12,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:04:12,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:12,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_02-04-12.log] [testng] 02:04:12,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-25 02:04:12,821] [main] testng.directory = /data [testng] [2024-04-25 02:04:12,821] [main] testng.configDirectory = /config [testng] [2024-04-25 02:04:12,830] [main] testng.multiplier = 1.0 [testng] [2024-04-25 02:04:12,830] [main] testng.in-memory = false [testng] [2024-04-25 02:04:12,831] [main] testng.allow-missing = false [testng] [2024-04-25 02:04:12,831] [main] user.language = en [testng] [2024-04-25 02:04:12,831] [main] user.country = ${user.country} [testng] [2024-04-25 02:04:12,831] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-25 02:04:23,462] [main] ---------------------------------------- [testng] [2024-04-25 02:04:23,463] [main] Total files: 268 [testng] [2024-04-25 02:04:23,463] [main] Scan time: 10.631 s (39 ms/file) [testng] [2024-04-25 02:04:23,463] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 160 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-25 02:04:33,692] [pool-1-thread-1] Initializing /data/steve/Misc SXM test images/AVI movie/Clean Cu(110) LEED.avi: [testng] 02:04:33,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:04:33,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_02-04-33.log] [testng] 02:04:33,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f28ab8b - End of configuration. [testng] [2024-04-25 02:04:33,713] [pool-1-thread-12] Initializing /data/steve/TIFF/ta269 TIFF: [testng] 02:04:33,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:04:33,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_02-04-33.log] [testng] 02:04:33,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120def1a - End of configuration. [testng] [2024-04-25 02:04:33,735] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/HOPG.tif: [testng] 02:04:33,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:04:33,736 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,737 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_02-04-33.log] [testng] 02:04:33,737 |-INFO in ch.qos.logback.core.sift.SiftProcessor@229caa90 - End of configuration. [testng] [2024-04-25 02:04:33,782] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM v4 (Gabriella)/159HF02.ZFP: [testng] 02:04:33,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:04:33,782 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_02-04-33.log] [testng] 02:04:33,783 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7b7fbf - End of configuration. [testng] [2024-04-25 02:04:33,797] [pool-1-thread-9] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/2-18-05A.afm: [testng] 02:04:33,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:04:33,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_02-04-33.log] [testng] 02:04:33,798 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7dcc0d44 - End of configuration. [testng] [2024-04-25 02:04:33,810] [pool-1-thread-8] Initializing /data/steve/TIFF/Macrophage cell images/T48-44 800 24-bit.tif: [testng] 02:04:33,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:04:33,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_02-04-33.log] [testng] 02:04:33,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70ddd10f - End of configuration. [testng] [2024-04-25 02:04:33,868] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/RICK1.IMG: [testng] 02:04:33,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:04:33,869 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,869 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_02-04-33.log] [testng] 02:04:33,870 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eb665fe - End of configuration. [testng] [2024-04-25 02:04:33,896] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/SCREEN1.PICT: [testng] 02:04:33,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:04:33,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:33,897 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_02-04-33.log] [testng] 02:04:33,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c1f9dc7 - End of configuration. [testng] [2024-04-25 02:04:34,052] [pool-1-thread-5] Initializing /data/steve/TIFF/Macrophage cell images/T24-24 1600 36_48-bit.tif: [testng] 02:04:34,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:04:34,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:34,053 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_02-04-34.log] [testng] 02:04:34,053 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79860d34 - End of configuration. [testng] [2024-04-25 02:04:34,089] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/BALLS.IMG: [testng] 02:04:34,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:04:34,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:34,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_02-04-34.log] [testng] 02:04:34,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@788e3003 - End of configuration. [testng] [2024-04-25 02:04:34,106] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.19 (Michael Z)/Wafer_vesicles_2min_010.STP: [testng] 02:04:34,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:04:34,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:34,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_02-04-34.log] [testng] 02:04:34,107 |-INFO in ch.qos.logback.core.sift.SiftProcessor@203ed516 - End of configuration. [testng] [2024-04-25 02:04:34,125] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/FFM204.TIF: [testng] 02:04:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:04:34,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:04:34,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_02-04-34.log] [testng] 02:04:34,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e59fa94 - End of configuration. [testng] [2024-04-25 02:04:35,550] [pool-1-thread-12] Initializing /data/steve/Bio-Rad (Nico Lindegger)/a.PIC: [testng] [2024-04-25 02:04:35,570] [pool-1-thread-9] Initializing /data/steve/JEOL/WinSem (Sue)/TA.IMG: [testng] [2024-04-25 02:04:35,600] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-31.IMG: [testng] [2024-04-25 02:04:35,621] [pool-1-thread-2] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (4 rpts) TIFF: [testng] [2024-04-25 02:04:35,638] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Sue D)/Honey Bee: [testng] [2024-04-25 02:04:35,853] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan (Sue D)/WOODLOUSE: [testng] [2024-04-25 02:04:35,865] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Hough transform/Dale's bubbles: [testng] [2024-04-25 02:04:35,979] [pool-1-thread-8] Initializing /data/steve/Misc SXM test images/Hough transform/Nathalie's test: [testng] [2024-04-25 02:04:36,002] [pool-1-thread-7] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY: [testng] [2024-04-25 02:04:36,077] [pool-1-thread-4] Initializing /data/steve/TIFF/Macrophage cell images/D1-A-1 1392 36-bit.tif: [testng] [2024-04-25 02:04:36,172] [pool-1-thread-2] Initializing /data/steve/JEOL/SPM (Masashi N)/AFM204.TIF: [testng] [2024-04-25 02:04:36,194] [pool-1-thread-12] Initializing /data/steve/Leica TCS (Keith B)/25_5BJ.SXM: [testng] [2024-04-25 02:04:36,306] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/Chironomus2.pict: [testng] [2024-04-25 02:04:36,451] [pool-1-thread-6] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.TIF: [testng] [2024-04-25 02:04:36,485] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6stack3.lsm: [testng] [2024-04-25 02:04:36,531] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Oxygen map 1.dm3: [testng] [2024-04-25 02:04:36,573] [pool-1-thread-9] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_3.img: [testng] [2024-04-25 02:04:36,618] [pool-1-thread-11] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-2b.HIS: [testng] [2024-04-25 02:04:36,672] [pool-1-thread-7] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm2.afm: [testng] [2024-04-25 02:04:36,747] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50zfr.tif: [testng] [2024-04-25 02:04:36,778] [pool-1-thread-10] Initializing /data/steve/SM-Camera/W(110)+Fe,5nA,30min@110eV: [testng] [2024-04-25 02:04:36,818] [pool-1-thread-2] Initializing /data/steve/Bio-Rad (Nico Lindegger)/b.PIC: [testng] [2024-04-25 02:04:36,927] [pool-1-thread-3] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/1_2h2_3.img: [testng] [2024-04-25 02:04:37,038] [pool-1-thread-6] Initializing /data/steve/Burleigh/Burleigh v1/Burleigh.IMG: [testng] [2024-04-25 02:04:37,079] [pool-1-thread-8] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-3.HIS: [testng] [2024-04-25 02:04:37,180] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/TwoDots.STP: [testng] [2024-04-25 02:04:37,241] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_01.SM2: [testng] [2024-04-25 02:04:37,274] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/T08-08 1600 24-bit.tif: [testng] [2024-04-25 02:04:37,389] [pool-1-thread-11] Initializing /data/steve/SM-Camera/Orhan + IPES rig: [testng] [2024-04-25 02:04:37,553] [pool-1-thread-9] Initializing /data/steve/Misc SXM test images/Fake STM/Fake STM (8 rpts) TIFF: [testng] [2024-04-25 02:04:37,593] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/IM_P1.TFR: [testng] [2024-04-25 02:04:37,634] [pool-1-thread-8] Initializing /data/steve/Gatan/Gatan TIFF/THE FLY 4 TIFF: [testng] [2024-04-25 02:04:37,724] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/SloanSpec.SM2: [testng] [2024-04-25 02:04:37,774] [pool-1-thread-12] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-nopack.HIS: [testng] [2024-04-25 02:04:37,854] [pool-1-thread-1] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm1.afm: [testng] [2024-04-25 02:04:37,898] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMitose5.pict: [testng] [2024-04-25 02:04:37,921] [pool-1-thread-5] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo07.sm2: [testng] [2024-04-25 02:04:37,932] [pool-1-thread-6] Initializing /data/steve/TIFF/CD-ROM TIFF: [testng] [2024-04-25 02:04:38,051] [pool-1-thread-2] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001.xqd: [testng] [2024-04-25 02:04:38,259] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 M 40s: [testng] [2024-04-25 02:04:38,319] [pool-1-thread-9] Initializing /data/steve/VG SAM (Karen)/PEAK.DTI: [testng] [2024-04-25 02:04:38,333] [pool-1-thread-1] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 2.5: [testng] [2024-04-25 02:04:38,350] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-8bit.HIS: [testng] [2024-04-25 02:04:38,364] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA2.TFR: [testng] [2024-04-25 02:04:38,379] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Oliver Leifeld)/SM02_08.SM2: [testng] [2024-04-25 02:04:38,437] [pool-1-thread-10] Initializing /data/steve/Targa/Test.TGA: [testng] [2024-04-25 02:04:38,596] [pool-1-thread-2] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEC.IMG: [testng] [2024-04-25 02:04:38,705] [pool-1-thread-9] Initializing /data/steve/JPK Instr (Christian L)/Anti-reflex-coating.jpk: [testng] [2024-04-25 02:04:38,767] [pool-1-thread-3] Initializing /data/steve/JPK Instr (Christian L)/Virus.jpk: [testng] [2024-04-25 02:04:38,839] [pool-1-thread-6] Initializing /data/steve/FITS/M104.fits: [testng] [2024-04-25 02:04:38,846] [pool-1-thread-5] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990301c.tif: [testng] [2024-04-25 02:04:38,906] [pool-1-thread-8] Initializing /data/steve/JEOL/WinSem (Sue)/CONCRETE.IMG: [testng] [2024-04-25 02:04:38,934] [pool-1-thread-7] Initializing /data/steve/TIFF/Macrophage cell images/Pre-d-0 1392 36-bit.tif: [testng] [2024-04-25 02:04:38,960] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDR2-1.2FL: [testng] [2024-04-25 02:04:39,106] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Chromosome images/HKGmaizeMei3.pict: [testng] [2024-04-25 02:04:39,150] [pool-1-thread-12] Initializing /data/steve/Gatan/Gatan (Sue D)/SEM 500X (Larry): [testng] [2024-04-25 02:04:39,176] [pool-1-thread-1] Initializing /data/steve/JPK Instr (Christian L)/Titanium-implant.jpk: [testng] [2024-04-25 02:04:39,278] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm3: [testng] [2024-04-25 02:04:39,298] [pool-1-thread-11] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm3.afm: [testng] [2024-04-25 02:04:39,340] [pool-1-thread-9] Initializing /data/steve/Philips (Markus G)/302.TIF: [testng] [2024-04-25 02:04:39,391] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan Mac (Guy Mayor)/Digital Micrograph 3.4: [testng] [2024-04-25 02:04:39,499] [pool-1-thread-3] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLED.IMG: [testng] [2024-04-25 02:04:39,540] [pool-1-thread-6] Initializing /data/steve/Philips (Markus G)/135-30.IMG: [testng] [2024-04-25 02:04:39,557] [pool-1-thread-2] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031020.afm: [testng] [2024-04-25 02:04:39,651] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1.lsm: [testng] [2024-04-25 02:04:39,722] [pool-1-thread-11] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.ffr: [testng] [2024-04-25 02:04:39,772] [pool-1-thread-5] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/FGD006.TIF: [testng] [2024-04-25 02:04:39,824] [pool-1-thread-12] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm1.afm: [testng] [2024-04-25 02:04:39,853] [pool-1-thread-8] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000K.SM3: [testng] [2024-04-25 02:04:39,880] [pool-1-thread-10] Initializing /data/steve/RHK Tech/RHK-XPM Pro (Lydie L)/B70417000Q.SM3: [testng] [2024-04-25 02:04:39,925] [pool-1-thread-4] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50.zfr: [testng] [2024-04-25 02:04:39,977] [pool-1-thread-2] Initializing /data/steve/RHK Tech/RHK IV (Koji N)/02042603.sm2: [testng] [2024-04-25 02:04:40,109] [pool-1-thread-8] Initializing /data/steve/Unisoku (Takashi)/Sample.HDR: [testng] [2024-04-25 02:04:40,129] [pool-1-thread-10] Initializing /data/steve/TopoMetrix/Topo STM (Liam McD)/GRID1.TFR: [testng] [2024-04-25 02:04:40,161] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_05.SM2: [testng] [2024-04-25 02:04:40,204] [pool-1-thread-1] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_04.SM2: [testng] [2024-04-25 02:04:40,230] [pool-1-thread-6] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 2 samples:pixel/coltubfitc1proj.lsm: [testng] [2024-04-25 02:04:40,276] [pool-1-thread-2] Initializing /data/steve/FITS/M13.fits: [testng] [2024-04-25 02:04:40,298] [pool-1-thread-9] Initializing /data/steve/Gatan/Gatan TIFF/BALL TIFF: [testng] [2024-04-25 02:04:40,388] [pool-1-thread-3] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/npc-liq-sharO_003.STP: [testng] [2024-04-25 02:04:40,449] [pool-1-thread-5] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-3.xqd: [testng] [2024-04-25 02:04:40,483] [pool-1-thread-11] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/JEOL3.tif: [testng] [2024-04-25 02:04:40,594] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/98042103.top: [testng] [2024-04-25 02:04:40,621] [pool-1-thread-1] Initializing /data/steve/JEOL/JSM (Inger Ekvell)/g11@0.IMG: [testng] [2024-04-25 02:04:40,665] [pool-1-thread-2] Initializing /data/steve/TIFF/ta123 stack TIFF: [testng] [2024-04-25 02:04:40,710] [pool-1-thread-10] Initializing /data/steve/Gatan/Gatan (Patrick Burton)/PDB_DARK_25k.dm2: [testng] [2024-04-25 02:04:40,793] [pool-1-thread-4] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Hal E)/03-17-05A.afm: [testng] [2024-04-25 02:04:40,836] [pool-1-thread-6] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY A: [testng] [2024-04-25 02:04:40,873] [pool-1-thread-3] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/stm3.afm: [testng] [2024-04-25 02:04:40,895] [pool-1-thread-8] Initializing /data/steve/Molecular Imaging/Mol Imag v5.0 (Lionel S)/Cu#18-NaOH-035.STP: [testng] [2024-04-25 02:04:40,930] [pool-1-thread-5] Initializing /data/steve/Quesant Instr/Quesant v2.0 (Brad Taft)/03031004.afm: [testng] [2024-04-25 02:04:40,976] [pool-1-thread-12] Initializing /data/steve/Oxford Instr (Yoshimasa)/80619a.top: [testng] [2024-04-25 02:04:41,124] [pool-1-thread-4] Initializing /data/steve/Philips (Markus G)/135-33.IMG: [testng] [2024-04-25 02:04:41,189] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/014.STP: [testng] [2024-04-25 02:04:41,271] [pool-1-thread-5] Initializing /data/steve/SBIG/M82 H 100s Tr=10s: [testng] [2024-04-25 02:04:41,317] [pool-1-thread-3] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 2: [testng] [2024-04-25 02:04:41,330] [pool-1-thread-11] Initializing /data/steve/Misc SXM test images/Chromosome images/HRhuman1.pict: [testng] [2024-04-25 02:04:41,360] [pool-1-thread-10] Initializing /data/steve/Hamamatsu (Keith B)/HIS-12bit-1a.HIS: [testng] [2024-04-25 02:04:41,375] [pool-1-thread-1] Initializing /data/steve/TopoMetrix/Topo STM v5 (Ewald B)/c80-50ffr.tif: [testng] [2024-04-25 02:04:41,417] [pool-1-thread-2] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/PA7.TFR: [testng] [2024-04-25 02:04:41,435] [pool-1-thread-8] Initializing /data/steve/Zeiss LSM/Zeiss LSM (John S)/Zeiss LSM 1 sample:pixel/ug6proj3.lsm: [testng] [2024-04-25 02:04:41,465] [pool-1-thread-7] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEB.IMG: [testng] [2024-04-25 02:04:41,592] [pool-1-thread-6] Initializing /data/steve/RHK Tech/RHK STS (Peter Sloan)/B50303AS.SM2: [testng] [2024-04-25 02:04:41,771] [pool-1-thread-12] Initializing /data/steve/SBIG/M81 H 250s Tr=5s: [testng] [2024-04-25 02:04:41,828] [pool-1-thread-11] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/BF super alliage.dm3: [testng] [2024-04-25 02:04:41,855] [pool-1-thread-2] Initializing /data/steve/Molecular Imaging/Mol Imag v4.18 (Reinat)/car-mac-con-g_003.STP: [testng] [2024-04-25 02:04:41,888] [pool-1-thread-8] Initializing /data/steve/TIFF/CONCRETE TIFF: [testng] [2024-04-25 02:04:41,952] [pool-1-thread-9] Initializing /data/steve/TopoMetrix/Topo SFM (SC)/FFT test: [testng] [2024-04-25 02:04:42,014] [pool-1-thread-4] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEE.IMG: [testng] [2024-04-25 02:04:42,043] [pool-1-thread-10] Initializing /data/steve/Quesant Instr/Quesant v1.2 (Marc F)/afm2.afm: [testng] [2024-04-25 02:04:42,085] [pool-1-thread-3] Initializing /data/steve/Hamamatsu (Keith B)/HIS-16bit-packed.HIS: [testng] [2024-04-25 02:04:42,111] [pool-1-thread-6] Initializing /data/steve/JEOL/WinSem (Sue)/SIC2.IMG: [testng] [2024-04-25 02:04:42,178] [pool-1-thread-1] Initializing /data/steve/Zeiss LSM/Zeiss LSM - 2 samp:pix (??)/16bcutagain.lsm: [testng] [2024-04-25 02:04:42,312] [pool-1-thread-5] Initializing /data/steve/Gatan/Gatan (Sue D)/THE FLY 3: [testng] [2024-04-25 02:04:42,338] [pool-1-thread-2] Initializing /data/steve/VG SAM (Karen)/BGND.DTI: [testng] [2024-04-25 02:04:42,376] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808002.xqf: [testng] [2024-04-25 02:04:42,450] [pool-1-thread-10] Initializing /data/steve/Misc SXM test images/BMP images/m20_p.bmp: [testng] [2024-04-25 02:04:42,454] [pool-1-thread-11] Initializing /data/steve/Philips (Markus G)/302.IMG: [testng] [2024-04-25 02:04:42,500] [pool-1-thread-3] Initializing /data/steve/Philips (Markus G)/135-32.IMG: [testng] [2024-04-25 02:04:42,601] [pool-1-thread-9] Initializing /data/steve/JEOL/SEM (Steve Foulds)/IPS2000.DAT: [testng] [2024-04-25 02:04:42,637] [pool-1-thread-2] Initializing /data/steve/UBM (Rosset)/SG2.PR3: [testng] [2024-04-25 02:04:42,658] [pool-1-thread-12] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_03.SM2: [testng] [2024-04-25 02:04:42,731] [pool-1-thread-1] Initializing /data/steve/JEOL/WinSem (Sue)/Shuttle tile ceramic/SHUTTLEA.IMG: [testng] [2024-04-25 02:04:42,770] [pool-1-thread-10] Initializing /data/steve/Burleigh/Burleigh v2/Graphite: [testng] [2024-04-25 02:04:42,810] [pool-1-thread-4] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Demo04.sm2: [testng] [2024-04-25 02:04:42,823] [pool-1-thread-7] Initializing /data/steve/FITS/Meade DSI/M31bG1.fts: [testng] [2024-04-25 02:04:42,830] [pool-1-thread-8] Initializing /data/steve/Leica TCS (Keith B)/25_5BB.SXM: [testng] [2024-04-25 02:04:42,893] [pool-1-thread-6] Initializing /data/steve/Misc SXM test images/Stacks/DoF test stack (Ahnelt): [testng] [2024-04-25 02:04:42,945] [pool-1-thread-5] Initializing /data/steve/TopoMetrix/Topo MFM (SC)/NDPOL-01.TFR: [testng] [2024-04-25 02:04:43,003] [pool-1-thread-12] Initializing /data/steve/Molecular Imaging/Mol Imag v5.2 (Steve Higgins)/015.STP: [testng] [2024-04-25 02:04:43,045] [pool-1-thread-7] Initializing /data/steve/Seiko Instr (Hwansoo)/05808001-2.xqd: [testng] [2024-04-25 02:04:43,117] [pool-1-thread-11] Initializing /data/steve/Burleigh/Burleigh v2/Burleigh v2 (Phil W)/0_h4_4.img: [testng] [2024-04-25 02:04:43,141] [pool-1-thread-2] Initializing /data/steve/Gatan/Gatan TIFF/Si CHIP TIFF: [testng] [2024-04-25 02:04:43,188] [pool-1-thread-4] Initializing /data/steve/TIFF/Little owl TIFF: [testng] [2024-04-25 02:04:43,226] [pool-1-thread-9] Initializing /data/steve/FITS/M51.fits: [testng] [2024-04-25 02:04:43,230] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bR1.fts: [testng] [2024-04-25 02:04:43,244] [pool-1-thread-3] Initializing /data/steve/RHK Tech/RHK (Bob Baker)/Examp_02.SM2: [testng] [2024-04-25 02:04:43,300] [pool-1-thread-5] Initializing /data/steve/Misc SXM test images/Stacks/Fred's stack: [testng] [2024-04-25 02:04:43,415] [pool-1-thread-9] Initializing /data/steve/Gatan/TEM (Larry Thomas)/TEM 10 KX: [testng] [2024-04-25 02:04:43,424] [pool-1-thread-12] Initializing /data/steve/Zeiss LSM/Zeiss LSM (Ewald B)/NIALDIAN.TIF: [testng] [2024-04-25 02:04:43,454] [pool-1-thread-7] Initializing /data/steve/TIFF/8MAR03A.TIFF: [testng] [2024-04-25 02:04:43,482] [pool-1-thread-8] Initializing /data/steve/TIFF/Hough test TIFF: [testng] [2024-04-25 02:04:43,509] [pool-1-thread-6] Initializing /data/steve/TIFF/HAFF SEM: [testng] [2024-04-25 02:04:43,548] [pool-1-thread-1] Initializing /data/steve/TIFF/Macrophage cell images/RT1-f-24 1600 24-bit.tif: [testng] [2024-04-25 02:04:43,630] [pool-1-thread-10] Initializing /data/steve/FITS/Meade DSI/M31bB1.fts: [testng] [2024-04-25 02:04:43,680] [pool-1-thread-3] Initializing /data/steve/JEOL/SPM (Hiroyuki Isobe)/990304j.tif: [testng] [2024-04-25 02:04:43,752] [pool-1-thread-4] Initializing /data/steve/Gatan/Gatan PC (Eric Leroy)/Iron map 10.dm3: [testng] [2024-04-25 02:04:43,759] [pool-1-thread-11] Initializing /data/steve/RHK Tech/RHK (Mark Flowers)/Silicon.sm2: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 8480, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS