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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@16 [BIOFORMATS-test-folder@16] $ /bin/bash -xe /tmp/jenkins7768470871389751804.sh + '[' zip = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_62983_merge_ci -v /uod/idr/repos/curated/zip:/data -v /uod/idr-scratch/merge-ci/curated/zip:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:31:44,931 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:31:44,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:31:44,933 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:44,934 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:31:44,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:31:44,934 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:31:44,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:31:44,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:44,935 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:31:44,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:31:44,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:31:44,936 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:31:45,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:31:45,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:31:45,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:31:45,211 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:31:45,220 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:31:45,220 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:31:45,220 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:31:45,221 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:31:45,221 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:31:45,222 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:31:45,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 01:31:45,233] [main] java.version = 1.8.0_342 [testng] 01:31:45,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:31:45,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:31:45,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_01-31-45.log] [testng] 01:31:45,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 01:31:45,289] [main] testng.directory = /data [testng] [2025-05-19 01:31:45,289] [main] testng.configDirectory = /config [testng] [2025-05-19 01:31:45,303] [main] testng.multiplier = 1.0 [testng] [2025-05-19 01:31:45,303] [main] testng.in-memory = false [testng] [2025-05-19 01:31:45,303] [main] testng.allow-missing = false [testng] [2025-05-19 01:31:45,303] [main] user.language = fr [testng] [2025-05-19 01:31:45,303] [main] user.country = FR [testng] [2025-05-19 01:31:45,303] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 01:31:46,060] [main] ---------------------------------------- [testng] [2025-05-19 01:31:46,060] [main] Total files: 22 [testng] [2025-05-19 01:31:46,060] [main] Scan time: 0.757 s (34 ms/file) [testng] [2025-05-19 01:31:46,060] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 22 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 01:45:00,519] [pool-1-thread-1] Initializing /data/samples/sdub.zip: [testng] 01:45:00,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:45:00,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:00,521 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_01-45-00.log] [testng] 01:45:00,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55caa28f - End of configuration. [testng] [2025-05-19 01:45:11,355] [pool-1-thread-12] Initializing /data/imagej/mri-stack.zip: [testng] 01:45:11,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:45:11,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:45:11,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_01-45-11.log] [testng] 01:45:11,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@483d0361 - End of configuration. [testng] [2025-05-19 01:46:31,919] [pool-1-thread-11] Initializing /data/imagej/hela-cells.zip: [testng] 01:46:31,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:46:31,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:46:31,920 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_01-46-31.log] [testng] 01:46:31,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72363211 - End of configuration. [testng] [2025-05-19 01:47:42,779] [pool-1-thread-10] Initializing /data/imagej/watershed-animation.zip: [testng] 01:47:42,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:47:42,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:47:42,779 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_01-47-42.log] [testng] 01:47:42,780 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e069031 - End of configuration. [testng] [2025-05-19 01:48:26,758] [pool-1-thread-9] Initializing /data/imagej/4D-Stack(256x256x20x10).zip: [testng] 01:48:26,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:48:26,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:48:26,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_01-48-26.log] [testng] 01:48:26,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f453825 - End of configuration. [testng] [2025-05-19 01:50:23,864] [pool-1-thread-8] Initializing /data/imagej/gel-electrophoresis.zip: [testng] 01:50:23,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:50:23,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:50:23,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_01-50-23.log] [testng] 01:50:23,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65ccf838 - End of configuration. [testng] [2025-05-19 01:51:14,777] [pool-1-thread-7] Initializing /data/imagej/cheetah_256_8.tif.zip: [testng] 01:51:14,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:51:14,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:14,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_01-51-14.log] [testng] 01:51:14,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fa2a37c - End of configuration. [testng] [2025-05-19 01:51:55,771] [pool-1-thread-6] Initializing /data/imagej/xrays.zip: [testng] 01:51:55,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:51:55,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:55,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_01-51-55.log] [testng] 01:51:55,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@208db5f5 - End of configuration. [testng] [2025-05-19 01:52:19,139] [pool-1-thread-5] Initializing /data/imagej/confocal-stack.zip: [testng] 01:52:19,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:52:19,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:52:19,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_01-52-19.log] [testng] 01:52:19,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e8e8c23 - End of configuration. [testng] [2025-05-19 01:53:42,555] [pool-1-thread-4] Initializing /data/imagej/FluorescentCells.zip: [testng] 01:53:42,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:53:42,555 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:53:42,556 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_01-53-42.log] [testng] 01:53:42,556 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7312362b - End of configuration. [testng] [2025-05-19 01:54:26,338] [pool-1-thread-3] Initializing /data/imagej/fat-cells.zip: [testng] 01:54:26,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:54:26,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:26,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_01-54-26.log] [testng] 01:54:26,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d908fb5 - End of configuration. [testng] [2025-05-19 01:54:55,276] [pool-1-thread-2] Initializing /data/imagej/Rat_Hippocampal_Neuron2.zip: [testng] 01:54:55,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:54:55,276 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:55,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_01-54-55.log] [testng] 01:54:55,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c6cf69c - End of configuration. [testng] [2025-05-19 01:57:29,262] [pool-1-thread-1] Initializing /data/imagej/se3.zip: [testng] [2025-05-19 02:07:04,923] [pool-1-thread-6] Initializing /data/imagej/RatBrain.zip: [testng] [2025-05-19 02:10:59,614] [pool-1-thread-12] Initializing /data/imagej/blood-brain-barrier.zip: [testng] [2025-05-19 02:12:32,143] [pool-1-thread-8] Initializing /data/imagej/Rat_Hippocampal_Neuron.zip: [testng] [2025-05-19 02:13:30,140] [pool-1-thread-10] Initializing /data/imagej/scala-media.zip: [testng] [2025-05-19 02:14:12,273] [pool-1-thread-4] Initializing /data/imagej/3D_Chromosome.zip: [testng] [2025-05-19 02:14:50,219] [pool-1-thread-11] Initializing /data/imagej/confocal-series.zip: [testng] [2025-05-19 02:15:38,376] [pool-1-thread-7] Initializing /data/imagej/m51.zip: [testng] [2025-05-19 02:16:04,225] [pool-1-thread-2] Initializing /data/imagej/flybrain.zip: [testng] [2025-05-19 02:17:12,130] [pool-1-thread-3] Initializing /data/samples/bat-cochlea-volume.zip: [testng] 02:48:09,290 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:48:09,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:48:09,291 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_02-48-09.log] [testng] 02:48:09,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9785903 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1166, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 76 minutes 27 seconds Finished: SUCCESS