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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins3568369106039844204.sh + '[' afi = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63043_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 04:36:20,512 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:36:20,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 04:36:20,514 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:36:20,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:36:20,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:36:20,515 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:36:20,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:36:20,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:36:20,516 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:36:20,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:36:20,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:36:20,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:36:20,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:36:20,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:36:20,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:36:20,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:36:20,807 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:36:20,807 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:36:20,807 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:36:20,808 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:36:20,808 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 04:36:20,809 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 04:36:20,809 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 04:36:20,818] [main] java.version = 1.8.0_342 [testng] 04:36:20,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:36:20,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:36:20,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_04-36-20.log] [testng] 04:36:20,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 04:36:20,932] [main] testng.directory = /data [testng] [2025-05-19 04:36:20,933] [main] testng.configDirectory = /config [testng] [2025-05-19 04:36:21,089] [main] testng.multiplier = 1.0 [testng] [2025-05-19 04:36:21,089] [main] testng.in-memory = false [testng] [2025-05-19 04:36:21,089] [main] testng.allow-missing = false [testng] [2025-05-19 04:36:21,089] [main] user.language = fr [testng] [2025-05-19 04:36:21,089] [main] user.country = FR [testng] [2025-05-19 04:36:21,089] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 04:36:42,947] [main] ---------------------------------------- [testng] [2025-05-19 04:36:42,947] [main] Total files: 16 [testng] [2025-05-19 04:36:42,948] [main] Scan time: 21.858 s (1366 ms/file) [testng] [2025-05-19 04:36:42,948] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 15 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 04:38:43,495] [pool-1-thread-1] Initializing /data/samples/5343.afi: [testng] 04:38:43,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:38:43,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:43,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_04-38-43.log] [testng] 04:38:43,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75f770d8 - End of configuration. [testng] [2025-05-19 04:38:48,566] [pool-1-thread-12] Initializing /data/samples/5347.afi: [testng] 04:38:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:38:48,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:48,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_04-38-48.log] [testng] 04:38:48,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@468957 - End of configuration. [testng] [2025-05-19 04:38:56,065] [pool-1-thread-11] Initializing /data/samples/5383.afi: [testng] 04:38:56,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:38:56,066 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:56,066 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_04-38-56.log] [testng] 04:38:56,067 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b131bd - End of configuration. [testng] [2025-05-19 04:38:59,106] [pool-1-thread-10] Initializing /data/samples/5306.afi: [testng] 04:38:59,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:38:59,106 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:38:59,107 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_04-38-59.log] [testng] 04:38:59,108 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f1e554 - End of configuration. [testng] [2025-05-19 04:39:02,177] [pool-1-thread-9] Initializing /data/samples/5400.afi: [testng] 04:39:02,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:39:02,177 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:02,178 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_04-39-02.log] [testng] 04:39:02,178 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753d834f - End of configuration. [testng] [2025-05-19 04:39:08,018] [pool-1-thread-8] Initializing /data/samples/5365.afi: [testng] 04:39:08,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:39:08,018 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:08,019 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_04-39-08.log] [testng] 04:39:08,019 |-INFO in ch.qos.logback.core.sift.SiftProcessor@673cd323 - End of configuration. [testng] [2025-05-19 04:39:13,556] [pool-1-thread-7] Initializing /data/samples/5358.afi: [testng] 04:39:13,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:39:13,556 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:13,557 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_04-39-13.log] [testng] 04:39:13,558 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2eae8ec3 - End of configuration. [testng] [2025-05-19 04:39:20,393] [pool-1-thread-6] Initializing /data/samples/5446.afi: [testng] 04:39:20,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:39:20,393 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:20,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_04-39-20.log] [testng] 04:39:20,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413db770 - End of configuration. [testng] [2025-05-19 04:39:28,602] [pool-1-thread-5] Initializing /data/samples/5414.afi: [testng] 04:39:28,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:39:28,602 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:28,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_04-39-28.log] [testng] 04:39:28,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c783e8d - End of configuration. [testng] [2025-05-19 04:39:36,830] [pool-1-thread-4] Initializing /data/samples/5371.afi: [testng] 04:39:36,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:39:36,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:36,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_04-39-36.log] [testng] 04:39:36,831 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a1156eb - End of configuration. [testng] [2025-05-19 04:39:42,727] [pool-1-thread-3] Initializing /data/samples/5387.afi: [testng] 04:39:42,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:39:42,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:42,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_04-39-42.log] [testng] 04:39:42,729 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34b37611 - End of configuration. [testng] [2025-05-19 04:39:49,721] [pool-1-thread-2] Initializing /data/samples/5407.afi: [testng] 04:39:49,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:39:49,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:39:49,722 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_04-39-49.log] [testng] 04:39:49,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46e18d19 - End of configuration. [testng] [2025-05-19 04:42:00,434] [pool-1-thread-8] Initializing /data/samples/5440.afi: [testng] [2025-05-19 04:42:04,995] [pool-1-thread-10] Initializing /data/samples/5351.afi: [testng] [2025-05-19 04:42:10,099] [pool-1-thread-7] Initializing /data/samples/5339.afi: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 795, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 9 minutes 7 seconds Finished: SUCCESS