![[Jenkins]](/jenkins/static/7a3257c3/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9459421325044316093.sh + '[' ultraview = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63053_merge_ci -v /uod/idr/repos/curated/ultraview:/data -v /uod/idr-scratch/merge-ci/curated/ultraview:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:16:09,567 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:16:09,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 05:16:09,569 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:16:09,570 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:16:09,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:16:09,570 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:16:09,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:16:09,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:16:09,571 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:16:09,571 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:16:09,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:16:09,572 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:16:09,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:16:09,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:16:09,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:16:09,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:16:09,838 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:16:09,839 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:16:09,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:16:09,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:16:09,839 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 05:16:09,840 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 05:16:09,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 269 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 05:16:09,850] [main] java.version = 1.8.0_342 [testng] 05:16:09,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:16:09,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:16:09,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_05-16-09.log] [testng] 05:16:09,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 05:16:09,902] [main] testng.directory = /data [testng] [2025-05-19 05:16:09,902] [main] testng.configDirectory = /config [testng] [2025-05-19 05:16:09,914] [main] testng.multiplier = 1.0 [testng] [2025-05-19 05:16:09,914] [main] testng.in-memory = false [testng] [2025-05-19 05:16:09,914] [main] testng.allow-missing = false [testng] [2025-05-19 05:16:09,914] [main] user.language = fr [testng] [2025-05-19 05:16:09,914] [main] user.country = FR [testng] [2025-05-19 05:16:09,914] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 05:17:39,224] [main] ---------------------------------------- [testng] [2025-05-19 05:17:39,225] [main] Total files: 19 [testng] [2025-05-19 05:17:39,225] [main] Scan time: 89.31 s (4700 ms/file) [testng] [2025-05-19 05:17:39,225] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 05:19:30,632] [pool-1-thread-1] Initializing /data/kate/GreenRed6ZnoT/GreenRed5ZNoT.htm: [testng] 05:19:30,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:19:30,633 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:30,634 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_05-19-30.log] [testng] 05:19:30,634 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dbef403 - End of configuration. [testng] [2025-05-19 05:19:33,799] [pool-1-thread-12] Initializing /data/chad/UltraViewExamples/Bug/CHAD200820080724120123.HTM: [testng] 05:19:33,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:19:33,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:33,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_05-19-33.log] [testng] 05:19:33,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39e5147 - End of configuration. [testng] [2025-05-19 05:19:38,369] [pool-1-thread-11] Initializing /data/kate/GreenRedNoZ3T/GreenRedNoZ5T.htm: [testng] 05:19:38,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:19:38,370 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:38,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_05-19-38.log] [testng] 05:19:38,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29aefc76 - End of configuration. [testng] [2025-05-19 05:19:44,317] [pool-1-thread-10] Initializing /data/chad/20080107130850/IREN200820080107130850.HTM: [testng] 05:19:44,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:19:44,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:44,318 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_05-19-44.log] [testng] 05:19:44,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7157f89f - End of configuration. [testng] [2025-05-19 05:19:52,125] [pool-1-thread-9] Initializing /data/chad/UltraViewExamples/DIC_200820080724115245/CHAD200820080724115245.HTM: [testng] 05:19:52,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:19:52,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:52,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_05-19-52.log] [testng] 05:19:52,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28f492b2 - End of configuration. [testng] [2025-05-19 05:19:59,903] [pool-1-thread-8] Initializing /data/chad/DIC/EZRA200820080626102637.HTM: [testng] 05:19:59,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:19:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:19:59,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_05-19-59.log] [testng] 05:19:59,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6095cfc6 - End of configuration. [testng] [2025-05-19 05:20:06,063] [pool-1-thread-7] Initializing /data/kate/GreenRed6Z3T/GreenRed5Z5T.htm: [testng] 05:20:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:20:06,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:06,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_05-20-06.log] [testng] 05:20:06,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e10d976 - End of configuration. [testng] [2025-05-19 05:20:14,462] [pool-1-thread-6] Initializing /data/chad/UltraViewExample/works/CHAD200920090331181355.HTM: [testng] 05:20:14,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:20:14,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:14,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_05-20-14.log] [testng] 05:20:14,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e7f93c - End of configuration. [testng] [2025-05-19 05:20:21,683] [pool-1-thread-5] Initializing /data/kate/GreenRedNoZnoT/GreenRedNoZNoT.htm: [testng] 05:20:21,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:20:21,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:21,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_05-20-21.log] [testng] 05:20:21,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d23a6b0 - End of configuration. [testng] [2025-05-19 05:20:30,148] [pool-1-thread-4] Initializing /data/helio/2 copy Cnn g-tubGFP 111221#20/2 copy Cnn g-tubGFP 111221#20.htm: [testng] 05:20:30,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:20:30,148 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:30,149 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_05-20-30.log] [testng] 05:20:30,149 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b4e75fc - End of configuration. [testng] [2025-05-19 05:20:36,852] [pool-1-thread-3] Initializing /data/chad/UltraViewExamples/Works/CHAD200820080724121453.HTM: [testng] 05:20:36,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:20:36,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:36,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_05-20-36.log] [testng] 05:20:36,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d5f595e - End of configuration. [testng] [2025-05-19 05:20:44,260] [pool-1-thread-2] Initializing /data/chad/UltraViewSamples/series 3/RAJE200820080619090142.HTM: [testng] 05:20:44,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:20:44,260 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:20:44,261 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_05-20-44.log] [testng] 05:20:44,262 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62af8dcb - End of configuration. [testng] [2025-05-19 05:23:11,459] [pool-1-thread-9] Initializing /data/kate/Neutrophils#18/tiffs/Neutrophils#18.htm: [testng] [2025-05-19 05:23:20,367] [pool-1-thread-8] Initializing /data/kate/Neutrophils#18/Neutrophils#18.htm: [testng] [2025-05-19 05:24:40,203] [pool-1-thread-5] Initializing /data/chad/DIC_IREN200820080107120042/IREN200820080107120042.HTM: [testng] [2025-05-19 05:25:54,643] [pool-1-thread-11] Initializing /data/chad/UltraViewExample/doesNot/CHAD200920090331181253.HTM: [testng] [2025-05-19 05:26:54,925] [pool-1-thread-5] Initializing /data/todd/movement-1.htm: [testng] [2025-05-19 05:28:13,595] [pool-1-thread-12] Initializing /data/kate/GreenOnlyNoZnoT/GreenOnlyNoZnoT.htm: [testng] 08:41:09,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 08:41:09,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:41:09,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_08-41-09.log] [testng] 08:41:09,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2186ce7e - End of configuration. [testng] 09:05:14,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:05:14,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:14,864 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_09-05-14.log] [testng] 09:05:14,865 |-INFO in ch.qos.logback.core.sift.SiftProcessor@566d0c69 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 229 minutes 9 seconds Finished: SUCCESS