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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2034294649562410426.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63057_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 05:55:34,525 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:55:34,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 05:55:34,527 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:55:34,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:55:34,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:55:34,528 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:55:34,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:55:34,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:55:34,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:55:34,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:55:34,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:55:34,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:55:34,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:55:34,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:55:34,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:55:34,788 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:55:34,797 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:55:34,798 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:55:34,798 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:55:34,798 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:55:34,798 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 05:55:34,799 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 05:55:34,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 270 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 05:55:34,809] [main] java.version = 1.8.0_342 [testng] 05:55:34,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:55:34,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:55:34,858 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_05-55-34.log] [testng] 05:55:34,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 05:55:34,862] [main] testng.directory = /data [testng] [2025-05-19 05:55:34,862] [main] testng.configDirectory = /config [testng] [2025-05-19 05:55:34,874] [main] testng.multiplier = 1.0 [testng] [2025-05-19 05:55:34,874] [main] testng.in-memory = false [testng] [2025-05-19 05:55:34,874] [main] testng.allow-missing = false [testng] [2025-05-19 05:55:34,874] [main] user.language = fr [testng] [2025-05-19 05:55:34,874] [main] user.country = FR [testng] [2025-05-19 05:55:34,875] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 05:55:35,449] [main] ---------------------------------------- [testng] [2025-05-19 05:55:35,449] [main] Total files: 19 [testng] [2025-05-19 05:55:35,449] [main] Scan time: 0.574 s (30 ms/file) [testng] [2025-05-19 05:55:35,449] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 05:56:54,650] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 05:56:54,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:56:54,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:54,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_05-56-54.log] [testng] 05:56:54,652 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f7bee68 - End of configuration. [testng] [2025-05-19 05:56:57,532] [pool-1-thread-12] Initializing /data/samples/200R PICT0002.MRW: [testng] 05:56:57,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:56:57,532 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:57,533 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_05-56-57.log] [testng] 05:56:57,533 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e7163a4 - End of configuration. [testng] [2025-05-19 05:56:59,386] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] 05:56:59,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:56:59,386 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:56:59,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_05-56-59.log] [testng] 05:56:59,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8baf4ae - End of configuration. [testng] [2025-05-19 05:57:00,841] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] 05:57:00,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:57:00,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:00,842 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_05-57-00.log] [testng] 05:57:00,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@272d78d - End of configuration. [testng] [2025-05-19 05:57:02,535] [pool-1-thread-9] Initializing /data/samples/800R PICT0010.MRW: [testng] 05:57:02,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:57:02,536 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:02,536 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_05-57-02.log] [testng] 05:57:02,537 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68f0ea5c - End of configuration. [testng] [2025-05-19 05:57:03,887] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] 05:57:03,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:57:03,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:03,892 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_05-57-03.log] [testng] 05:57:03,893 |-INFO in ch.qos.logback.core.sift.SiftProcessor@375570d1 - End of configuration. [testng] [2025-05-19 05:57:05,760] [pool-1-thread-7] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 05:57:05,760 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:57:05,761 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:05,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_05-57-05.log] [testng] 05:57:05,762 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4677c861 - End of configuration. [testng] [2025-05-19 05:57:08,931] [pool-1-thread-6] Initializing /data/samples/3200R PICT0006.MRW: [testng] 05:57:08,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:57:08,931 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:08,932 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_05-57-08.log] [testng] 05:57:08,932 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f14569b - End of configuration. [testng] [2025-05-19 05:57:15,937] [pool-1-thread-5] Initializing /data/samples/400R PICT0003.MRW: [testng] 05:57:15,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:57:15,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:15,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_05-57-15.log] [testng] 05:57:15,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@502fc4d1 - End of configuration. [testng] [2025-05-19 05:57:19,253] [pool-1-thread-4] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] 05:57:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:57:19,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:19,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_05-57-19.log] [testng] 05:57:19,254 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b1f7572 - End of configuration. [testng] [2025-05-19 05:57:25,271] [pool-1-thread-3] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] 05:57:25,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:57:25,272 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:25,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_05-57-25.log] [testng] 05:57:25,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5709b96b - End of configuration. [testng] [2025-05-19 05:57:27,471] [pool-1-thread-2] Initializing /data/samples/1600R PICT0005.MRW: [testng] 05:57:27,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:57:27,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:57:27,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_05-57-27.log] [testng] 05:57:27,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d4d0386 - End of configuration. [testng] [2025-05-19 05:58:05,482] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] [2025-05-19 05:58:08,500] [pool-1-thread-7] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] [2025-05-19 05:58:11,511] [pool-1-thread-1] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] [2025-05-19 05:58:16,069] [pool-1-thread-8] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] [2025-05-19 05:58:18,786] [pool-1-thread-11] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2025-05-19 05:58:22,292] [pool-1-thread-2] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] [2025-05-19 05:58:27,748] [pool-1-thread-3] Initializing /data/samples/100R PICT0001.MRW: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 3 minutes 24 seconds Finished: SUCCESS