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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@13 [BIOFORMATS-test-folder@13] $ /bin/bash -xe /tmp/jenkins3973673164570184616.sh + '[' analyze = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63075_merge_ci -v /uod/idr/repos/curated/analyze:/data -v /uod/idr-scratch/merge-ci/curated/analyze:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 07:01:46,236 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 07:01:46,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 07:01:46,238 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:01:46,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 07:01:46,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 07:01:46,239 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 07:01:46,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 07:01:46,239 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:01:46,240 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 07:01:46,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 07:01:46,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 07:01:46,240 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 07:01:46,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 07:01:46,452 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 07:01:46,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 07:01:46,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 07:01:46,486 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 07:01:46,486 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 07:01:46,486 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 07:01:46,486 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 07:01:46,486 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 07:01:46,487 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 07:01:46,487 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 247 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 07:01:46,496] [main] java.version = 1.8.0_342 [testng] 07:01:46,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 07:01:46,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:01:46,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_07-01-46.log] [testng] 07:01:46,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 07:01:46,546] [main] testng.directory = /data [testng] [2025-05-19 07:01:46,546] [main] testng.configDirectory = /config [testng] [2025-05-19 07:01:46,558] [main] testng.multiplier = 1.0 [testng] [2025-05-19 07:01:46,558] [main] testng.in-memory = false [testng] [2025-05-19 07:01:46,558] [main] testng.allow-missing = false [testng] [2025-05-19 07:01:46,558] [main] user.language = fr [testng] [2025-05-19 07:01:46,559] [main] user.country = FR [testng] [2025-05-19 07:01:46,559] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 07:03:43,204] [main] ---------------------------------------- [testng] [2025-05-19 07:03:43,204] [main] Total files: 21 [testng] [2025-05-19 07:03:43,205] [main] Scan time: 116.645 s (5554 ms/file) [testng] [2025-05-19 07:03:43,205] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 07:05:26,154] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1.img.hdr: [testng] 07:05:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 07:05:26,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:26,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_07-05-26.log] [testng] 07:05:26,156 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bf9df7d - End of configuration. [testng] [2025-05-19 07:05:31,413] [pool-1-thread-12] Initializing /data/frans/betmask.hdr: [testng] 07:05:31,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 07:05:31,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:31,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_07-05-31.log] [testng] 07:05:31,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1be9daba - End of configuration. [testng] [2025-05-19 07:05:40,275] [pool-1-thread-11] Initializing /data/frans/CT_CHEST.hdr: [testng] 07:05:40,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 07:05:40,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:40,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_07-05-40.log] [testng] 07:05:40,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a11a4b9 - End of configuration. [testng] [2025-05-19 07:05:45,849] [pool-1-thread-10] Initializing /data/frans/ch2.hdr: [testng] 07:05:45,849 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 07:05:45,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:45,850 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_07-05-45.log] [testng] 07:05:45,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fec2c4b - End of configuration. [testng] [2025-05-19 07:05:51,608] [pool-1-thread-9] Initializing /data/frans/Test Files for Frans/F005_1002_MF_SCAN1_stat_brain_fdg_JJ_Volume_Corrected.hdr: [testng] 07:05:51,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 07:05:51,608 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:51,609 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_07-05-51.log] [testng] 07:05:51,609 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d703331 - End of configuration. [testng] [2025-05-19 07:05:58,523] [pool-1-thread-8] Initializing /data/frans/CT_KNEE.hdr: [testng] 07:05:58,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 07:05:58,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:05:58,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_07-05-58.log] [testng] 07:05:58,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26ab59ca - End of configuration. [testng] [2025-05-19 07:06:00,693] [pool-1-thread-7] Initializing /data/frans/aal.hdr: [testng] 07:06:00,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 07:06:00,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:00,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_07-06-00.log] [testng] 07:06:00,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8f289ad - End of configuration. [testng] [2025-05-19 07:06:03,003] [pool-1-thread-6] Initializing /data/frans/Test Files for Frans/06-101-mask-40pc2dil.hdr: [testng] 07:06:03,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 07:06:03,004 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:03,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_07-06-03.log] [testng] 07:06:03,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51a85f83 - End of configuration. [testng] [2025-05-19 07:06:07,188] [pool-1-thread-5] Initializing /data/frans/CT_FOOT.hdr: [testng] 07:06:07,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 07:06:07,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:07,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_07-06-07.log] [testng] 07:06:07,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10114018 - End of configuration. [testng] [2025-05-19 07:06:11,322] [pool-1-thread-4] Initializing /data/frans/CT_CRANI.hdr: [testng] 07:06:11,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 07:06:11,322 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:11,323 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_07-06-11.log] [testng] 07:06:11,323 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18b03250 - End of configuration. [testng] [2025-05-19 07:06:16,827] [pool-1-thread-3] Initializing /data/frans/CT_APERT.hdr: [testng] 07:06:16,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 07:06:16,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:16,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_07-06-16.log] [testng] 07:06:16,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7511d6a4 - End of configuration. [testng] [2025-05-19 07:06:20,732] [pool-1-thread-2] Initializing /data/frans/Test Files for Frans/PLA-zm2-16mm_1002_MF_V1.hdr: [testng] 07:06:20,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 07:06:20,732 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 07:06:20,733 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_07-06-20.log] [testng] 07:06:20,733 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1209fccd - End of configuration. [testng] [2025-05-19 07:07:16,655] [pool-1-thread-9] Initializing /data/frans/m000-MR_CHEST.gif: [testng] [2025-05-19 07:07:18,172] [pool-1-thread-2] Initializing /data/frans/CT_HAND.hdr: [testng] [2025-05-19 07:07:25,594] [pool-1-thread-3] Initializing /data/frans/Test Files for Frans/200-PLA_sansBD_spmT_0005.hdr: [testng] [2025-05-19 07:07:28,848] [pool-1-thread-7] Initializing /data/frans/CT_WHOLE.hdr: [testng] [2025-05-19 07:07:30,941] [pool-1-thread-10] Initializing /data/frans/MR_CHEST.hdr: [testng] [2025-05-19 07:07:37,231] [pool-1-thread-8] Initializing /data/frans/ch2bet.hdr: [testng] [2025-05-19 07:07:42,178] [pool-1-thread-4] Initializing /data/frans/brodmann.hdr: [testng] [2025-05-19 07:07:49,232] [pool-1-thread-11] Initializing /data/frans/MR_SEGBRAIN.hdr: [testng] [2025-05-19 07:07:54,179] [pool-1-thread-5] Initializing /data/frans/Test Files for Frans/1002-sag-transform-box-est_flip-ord.hdr: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 minutes 10 seconds Finished: SUCCESS