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Started by upstream project "BIOFORMATS-test-repo" build number 399 originally caused by: Started by upstream project "Trigger" build number 485 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins1220320875107901263.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_63095_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 10:08:42,036 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 10:08:42,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 10:08:42,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:08:42,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:08:42,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:08:42,039 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:08:42,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:08:42,039 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:08:42,040 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:08:42,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:08:42,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:08:42,040 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:08:42,318 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:08:42,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:08:42,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:08:42,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:08:42,354 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:08:42,354 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:08:42,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:08:42,355 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:08:42,355 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 10:08:42,356 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 10:08:42,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 316 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-19 10:08:42,366] [main] java.version = 1.8.0_342 [testng] 10:08:42,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:08:42,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:08:42,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-19_10-08-42.log] [testng] 10:08:42,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-19 10:08:42,440] [main] testng.directory = /data [testng] [2025-05-19 10:08:42,440] [main] testng.configDirectory = /config [testng] [2025-05-19 10:08:42,452] [main] testng.multiplier = 1.0 [testng] [2025-05-19 10:08:42,453] [main] testng.in-memory = false [testng] [2025-05-19 10:08:42,453] [main] testng.allow-missing = false [testng] [2025-05-19 10:08:42,453] [main] user.language = fr [testng] [2025-05-19 10:08:42,453] [main] user.country = FR [testng] [2025-05-19 10:08:42,453] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-19 10:08:44,096] [main] ---------------------------------------- [testng] [2025-05-19 10:08:44,096] [main] Total files: 18 [testng] [2025-05-19 10:08:44,097] [main] Scan time: 1.643 s (91 ms/file) [testng] [2025-05-19 10:08:44,097] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-19 10:11:19,788] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 10:11:19,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:11:19,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:19,789 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-19_10-11-19.log] [testng] 10:11:19,790 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e2b42a4 - End of configuration. [testng] [2025-05-19 10:11:24,366] [pool-1-thread-12] Initializing /data/ascb/423.psd: [testng] 10:11:24,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:11:24,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:24,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-19_10-11-24.log] [testng] 10:11:24,367 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73b0ac88 - End of configuration. [testng] [2025-05-19 10:11:28,553] [pool-1-thread-11] Initializing /data/misc/glossy_orbs.psd: [testng] 10:11:28,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:11:28,554 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:28,555 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-19_10-11-28.log] [testng] 10:11:28,555 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a6dba98 - End of configuration. [testng] [2025-05-19 10:11:32,941] [pool-1-thread-10] Initializing /data/misc/glossy_buttons.psd: [testng] 10:11:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:11:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:32,942 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-19_10-11-32.log] [testng] 10:11:32,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1431b118 - End of configuration. [testng] [2025-05-19 10:11:38,129] [pool-1-thread-9] Initializing /data/misc/venus_composite.psd: [testng] 10:11:38,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:11:38,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:38,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-19_10-11-38.log] [testng] 10:11:38,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2369cc17 - End of configuration. [testng] [2025-05-19 10:11:43,184] [pool-1-thread-8] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 10:11:43,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:11:43,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:43,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-19_10-11-43.log] [testng] 10:11:43,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47735069 - End of configuration. [testng] [2025-05-19 10:11:48,129] [pool-1-thread-7] Initializing /data/ascb/607x.psd: [testng] 10:11:48,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:11:48,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:48,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-19_10-11-48.log] [testng] 10:11:48,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cd19254 - End of configuration. [testng] [2025-05-19 10:11:52,591] [pool-1-thread-6] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 10:11:52,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:11:52,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:52,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-19_10-11-52.log] [testng] 10:11:52,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4782c138 - End of configuration. [testng] [2025-05-19 10:11:57,886] [pool-1-thread-5] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 10:11:57,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:11:57,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:11:57,887 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-19_10-11-57.log] [testng] 10:11:57,887 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f4d104a - End of configuration. [testng] [2025-05-19 10:12:01,299] [pool-1-thread-4] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 10:12:01,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:12:01,300 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:01,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-19_10-12-01.log] [testng] 10:12:01,301 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a0d25ad - End of configuration. [testng] [2025-05-19 10:12:07,507] [pool-1-thread-3] Initializing /data/big-images/8kx8k.psd: [testng] 10:12:07,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:12:07,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:07,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-19_10-12-07.log] [testng] 10:12:07,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6602796f - End of configuration. [testng] [2025-05-19 10:12:13,481] [pool-1-thread-2] Initializing /data/cris/house.tif: [testng] 10:12:13,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:12:13,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:12:13,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-19_10-12-13.log] [testng] 10:12:13,483 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cdd343f - End of configuration. [testng] [2025-05-19 10:13:17,352] [pool-1-thread-11] Initializing /data/simon/colour_separated_image.psd: [testng] [2025-05-19 10:13:21,443] [pool-1-thread-9] Initializing /data/ascb/thin&thick fill.2.psd: [testng] [2025-05-19 10:13:24,459] [pool-1-thread-5] Initializing /data/misc/venus_composite_8bit.psd: [testng] [2025-05-19 10:13:27,598] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] [2025-05-19 10:13:30,633] [pool-1-thread-12] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2025-05-19 10:13:34,640] [pool-1-thread-7] Initializing /data/misc/smilie.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 5 minutes 41 seconds Finished: SUCCESS