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Started by upstream project "BIOFORMATS-test-repo" build number 44 originally caused by: Started by upstream project "Trigger" build number 51 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins17736123610465277884.sh + '[' apng = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6332_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:20:44,317 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:20:44,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:20:44,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:44,319 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:20:44,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:20:44,320 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:20:44,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:20:44,320 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:44,321 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:20:44,321 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:20:44,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:20:44,322 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:20:44,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:20:44,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:20:44,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:20:44,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:20:44,527 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:20:44,527 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:20:44,527 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:20:44,528 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:20:44,528 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:20:44,529 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:20:44,529 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 208 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-25 02:20:44,538] [main] java.version = 21 [testng] 02:20:44,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:20:44,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:44,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_02-20-44.log] [testng] 02:20:44,586 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-25 02:20:44,587] [main] testng.directory = /data [testng] [2024-04-25 02:20:44,587] [main] testng.configDirectory = /config [testng] [2024-04-25 02:20:44,596] [main] testng.multiplier = 1.0 [testng] [2024-04-25 02:20:44,597] [main] testng.in-memory = false [testng] [2024-04-25 02:20:44,597] [main] testng.allow-missing = false [testng] [2024-04-25 02:20:44,597] [main] user.language = en [testng] [2024-04-25 02:20:44,597] [main] user.country = ${user.country} [testng] [2024-04-25 02:20:44,597] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-25 02:20:44,983] [main] ---------------------------------------- [testng] [2024-04-25 02:20:44,983] [main] Total files: 21 [testng] [2024-04-25 02:20:44,983] [main] Scan time: 0.386 s (18 ms/file) [testng] [2024-04-25 02:20:44,984] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-25 02:20:46,113] [pool-1-thread-1] Initializing /data/samples/william_wong05.png: [testng] 02:20:46,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:20:46,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_02-20-46.log] [testng] 02:20:46,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1632fe61 - End of configuration. [testng] [2024-04-25 02:20:46,129] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png: [testng] 02:20:46,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:20:46,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,131 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_02-20-46.log] [testng] 02:20:46,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@669da3cf - End of configuration. [testng] [2024-04-25 02:20:46,136] [pool-1-thread-11] Initializing /data/samples/MoonPhases.png: [testng] 02:20:46,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:20:46,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_02-20-46.log] [testng] 02:20:46,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36451b94 - End of configuration. [testng] [2024-04-25 02:20:46,155] [pool-1-thread-10] Initializing /data/samples/william_wong04.png: [testng] 02:20:46,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:20:46,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_02-20-46.log] [testng] 02:20:46,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@637d051c - End of configuration. [testng] [2024-04-25 02:20:46,164] [pool-1-thread-9] Initializing /data/samples/Matrix.png: [testng] 02:20:46,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:20:46,165 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_02-20-46.log] [testng] 02:20:46,166 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2db5951d - End of configuration. [testng] [2024-04-25 02:20:46,173] [pool-1-thread-8] Initializing /data/samples/orbit.png: [testng] 02:20:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:20:46,174 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_02-20-46.log] [testng] 02:20:46,175 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31da059f - End of configuration. [testng] [2024-04-25 02:20:46,182] [pool-1-thread-7] Initializing /data/samples/monkey_apng.png: [testng] 02:20:46,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:20:46,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_02-20-46.log] [testng] 02:20:46,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9b6eb0 - End of configuration. [testng] [2024-04-25 02:20:46,192] [pool-1-thread-6] Initializing /data/samples/william_wong02.png: [testng] 02:20:46,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:20:46,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_02-20-46.log] [testng] 02:20:46,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@799a00f9 - End of configuration. [testng] [2024-04-25 02:20:46,203] [pool-1-thread-5] Initializing /data/qa-7473/n.tif: [testng] 02:20:46,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:20:46,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,205 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_02-20-46.log] [testng] 02:20:46,206 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13100b0 - End of configuration. [testng] [2024-04-25 02:20:46,242] [pool-1-thread-4] Initializing /data/samples/chompy2.png: [testng] 02:20:46,242 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:20:46,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_02-20-46.log] [testng] 02:20:46,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16186c34 - End of configuration. [testng] [2024-04-25 02:20:46,250] [pool-1-thread-3] Initializing /data/samples/spinfox.png: [testng] 02:20:46,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:20:46,250 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,251 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_02-20-46.log] [testng] 02:20:46,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67da1ccb - End of configuration. [testng] [2024-04-25 02:20:46,259] [pool-1-thread-2] Initializing /data/samples/joanna_viera01.png: [testng] 02:20:46,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:20:46,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:20:46,260 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_02-20-46.log] [testng] 02:20:46,260 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5517ae99 - End of configuration. [testng] [2024-04-25 02:20:47,454] [pool-1-thread-2] Initializing /data/samples/phug_logo.png: [testng] [2024-04-25 02:20:47,461] [pool-1-thread-12] Initializing /data/qa-7473/x.png: [testng] [2024-04-25 02:20:47,466] [pool-1-thread-1] Initializing /data/samples/atom.png: [testng] [2024-04-25 02:20:47,792] [pool-1-thread-10] Initializing /data/samples/PhugAnimation3.png: [testng] [2024-04-25 02:20:47,800] [pool-1-thread-9] Initializing /data/samples/StarV838.png: [testng] [2024-04-25 02:20:47,804] [pool-1-thread-6] Initializing /data/samples/daniel_coltri_one.png: [testng] [2024-04-25 02:20:47,808] [pool-1-thread-4] Initializing /data/colin/test.sfstdge.png: [testng] [2024-04-25 02:20:47,812] [pool-1-thread-7] Initializing /data/samples/Sun.png: [testng] [2024-04-25 02:20:47,972] [pool-1-thread-11] Initializing /data/samples/william_wong01.png: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 7 seconds Finished: SUCCESS