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Started by upstream project "BIOFORMATS-test-repo" build number 44 originally caused by: Started by upstream project "Trigger" build number 51 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins14547700981615130197.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6339_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:24:58,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:24:58,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:24:58,344 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:24:58,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:24:58,389 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:24:58,389 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:24:58,390 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:24:58,390 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:24:58,391 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@428640fa - End of configuration. [testng] 02:24:58,392 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6bd61f98 - Registering current configuration as safe fallback point [testng] 02:24:58,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@48aca48b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 488 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-25 02:24:58,407] [main] java.version = 21 [testng] 02:24:58,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:24:58,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:24:58,581 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_02-24-58.log] [testng] 02:24:58,583 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-25 02:24:58,599] [main] testng.directory = /data [testng] [2024-04-25 02:24:58,599] [main] testng.configDirectory = /config [testng] [2024-04-25 02:24:58,632] [main] testng.multiplier = 1.0 [testng] [2024-04-25 02:24:58,652] [main] testng.in-memory = false [testng] [2024-04-25 02:24:58,652] [main] testng.allow-missing = false [testng] [2024-04-25 02:24:58,652] [main] user.language = en [testng] [2024-04-25 02:24:58,652] [main] user.country = ${user.country} [testng] [2024-04-25 02:24:58,652] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-25 02:24:59,735] [main] ---------------------------------------- [testng] [2024-04-25 02:24:59,736] [main] Total files: 32 [testng] [2024-04-25 02:24:59,736] [main] Scan time: 1.082 s (33 ms/file) [testng] [2024-04-25 02:24:59,736] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-25 02:25:03,826] [pool-1-thread-1] Initializing /data/geert/bad example1.jpg: [testng] 02:25:03,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:25:03,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,829 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_02-25-03.log] [testng] 02:25:03,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58e6897e - End of configuration. [testng] [2024-04-25 02:25:03,891] [pool-1-thread-12] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] 02:25:03,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:25:03,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,893 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_02-25-03.log] [testng] 02:25:03,894 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48aaf981 - End of configuration. [testng] [2024-04-25 02:25:03,926] [pool-1-thread-11] Initializing /data/adrian/test_img.1sc: [testng] 02:25:03,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:25:03,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_02-25-03.log] [testng] 02:25:03,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4872efef - End of configuration. [testng] [2024-04-25 02:25:03,990] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 02:25:03,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:25:03,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:03,991 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_02-25-03.log] [testng] 02:25:03,992 |-INFO in ch.qos.logback.core.sift.SiftProcessor@319c22e1 - End of configuration. [testng] [2024-04-25 02:25:04,078] [pool-1-thread-9] Initializing /data/geert/bad example1.1sc.jpg: [testng] 02:25:04,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:25:04,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_02-25-04.log] [testng] 02:25:04,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eeb94e0 - End of configuration. [testng] [2024-04-25 02:25:04,142] [pool-1-thread-8] Initializing /data/qa-29469/bad3.1sc: [testng] 02:25:04,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:25:04,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,145 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_02-25-04.log] [testng] 02:25:04,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bf8633 - End of configuration. [testng] [2024-04-25 02:25:04,232] [pool-1-thread-7] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 02:25:04,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:25:04,233 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,234 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_02-25-04.log] [testng] 02:25:04,235 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc837bb - End of configuration. [testng] [2024-04-25 02:25:04,273] [pool-1-thread-6] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:25:04,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:25:04,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_02-25-04.log] [testng] 02:25:04,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@111ea19f - End of configuration. [testng] [2024-04-25 02:25:04,293] [pool-1-thread-5] Initializing /data/geert/bad example1.1sc: [testng] 02:25:04,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:25:04,293 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_02-25-04.log] [testng] 02:25:04,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@458465a9 - End of configuration. [testng] [2024-04-25 02:25:04,350] [pool-1-thread-4] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:25:04,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:25:04,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_02-25-04.log] [testng] 02:25:04,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@246ee4cb - End of configuration. [testng] [2024-04-25 02:25:04,381] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] 02:25:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:25:04,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_02-25-04.log] [testng] 02:25:04,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78b2d7c7 - End of configuration. [testng] [2024-04-25 02:25:04,513] [pool-1-thread-2] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] 02:25:04,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:25:04,513 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:25:04,514 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_02-25-04.log] [testng] 02:25:04,514 |-INFO in ch.qos.logback.core.sift.SiftProcessor@117339ec - End of configuration. [testng] [2024-04-25 02:25:07,092] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2024-04-25 02:25:07,190] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-04-25 02:25:07,368] [pool-1-thread-7] Initializing /data/samples/imagesEight.1sc: [testng] [2024-04-25 02:25:07,390] [pool-1-thread-12] Initializing /data/samples/Criterion.1sc: [testng] [2024-04-25 02:25:07,957] [pool-1-thread-1] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-04-25 02:25:08,012] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-04-25 02:25:08,156] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-04-25 02:25:08,275] [pool-1-thread-7] Initializing /data/keith/test.1sc: [testng] [2024-04-25 02:25:08,299] [pool-1-thread-2] Initializing /data/qa-29459/bad.jpg: [testng] [2024-04-25 02:25:08,312] [pool-1-thread-9] Initializing /data/keith/test2.1sc: [testng] [2024-04-25 02:25:08,522] [pool-1-thread-10] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2024-04-25 02:25:08,682] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] [2024-04-25 02:25:09,050] [pool-1-thread-3] Initializing /data/qa-29459/bad.1sc: [testng] [2024-04-25 02:25:09,293] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-04-25 02:25:09,432] [pool-1-thread-7] Initializing /data/qa-29469/good.1sc: [testng] [2024-04-25 02:25:09,484] [pool-1-thread-12] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-04-25 02:25:09,577] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2024-04-25 02:25:09,736] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-04-25 02:25:09,961] [pool-1-thread-5] Initializing /data/david/Opened in imageJ.tiff: [testng] [2024-04-25 02:25:10,034] [pool-1-thread-8] Initializing /data/geert/good example1.1sc.jpg: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS