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Started by upstream project "BIOFORMATS-test-repo" build number 44 originally caused by: Started by upstream project "Trigger" build number 51 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins9933946735906623758.sh + '[' imagepro = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6363_merge_ci -v /uod/idr/repos/curated/imagepro:/data -v /uod/idr-scratch/merge-ci/curated/imagepro:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:45:33,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:45:33,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service. [testng] 02:45:33,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:45:33,251 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:45:33,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:45:33,252 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:45:33,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:45:33,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:45:33,253 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:45:33,253 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:45:33,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:45:33,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:45:33,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:45:33,428 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:45:33,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:45:33,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:45:33,462 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:45:33,462 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:45:33,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:45:33,463 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:45:33,463 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration. [testng] 02:45:33,464 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point [testng] 02:45:33,464 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 211 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-25 02:45:33,475] [main] java.version = 21 [testng] 02:45:33,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:45:33,479 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:33,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_02-45-33.log] [testng] 02:45:33,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration. [testng] [2024-04-25 02:45:33,527] [main] testng.directory = /data [testng] [2024-04-25 02:45:33,528] [main] testng.configDirectory = /config [testng] [2024-04-25 02:45:33,537] [main] testng.multiplier = 1.0 [testng] [2024-04-25 02:45:33,538] [main] testng.in-memory = false [testng] [2024-04-25 02:45:33,538] [main] testng.allow-missing = false [testng] [2024-04-25 02:45:33,538] [main] user.language = en [testng] [2024-04-25 02:45:33,538] [main] user.country = ${user.country} [testng] [2024-04-25 02:45:33,538] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-25 02:45:34,693] [main] ---------------------------------------- [testng] [2024-04-25 02:45:34,693] [main] Total files: 22 [testng] [2024-04-25 02:45:34,693] [main] Scan time: 1.155 s (52 ms/file) [testng] [2024-04-25 02:45:34,694] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-25 02:45:42,722] [pool-1-thread-1] Initializing /data/converted/clown.ipw: [testng] 02:45:42,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:45:42,723 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,724 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_02-45-42.log] [testng] 02:45:42,724 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b10e3d2 - End of configuration. [testng] [2024-04-25 02:45:42,746] [pool-1-thread-12] Initializing /data/alex/AFAset0003.ips: [testng] 02:45:42,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:45:42,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_02-45-42.log] [testng] 02:45:42,747 |-INFO in ch.qos.logback.core.sift.SiftProcessor@377b66b4 - End of configuration. [testng] [2024-04-25 02:45:42,762] [pool-1-thread-11] Initializing /data/converted/NESb_C2_TP7.ipw: [testng] 02:45:42,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:45:42,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,763 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_02-45-42.log] [testng] 02:45:42,763 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4286258b - End of configuration. [testng] [2024-04-25 02:45:42,802] [pool-1-thread-10] Initializing /data/converted/clown8c.ipw: [testng] 02:45:42,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:45:42,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_02-45-42.log] [testng] 02:45:42,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7639e7f0 - End of configuration. [testng] [2024-04-25 02:45:42,839] [pool-1-thread-9] Initializing /data/samples/FLDUAL.TIF: [testng] 02:45:42,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:45:42,839 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,840 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_02-45-42.log] [testng] 02:45:42,840 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f880366 - End of configuration. [testng] [2024-04-25 02:45:42,905] [pool-1-thread-8] Initializing /data/converted/mitosis-test.tif: [testng] 02:45:42,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:45:42,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:42,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_02-45-42.log] [testng] 02:45:42,907 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4745ac65 - End of configuration. [testng] [2024-04-25 02:45:43,075] [pool-1-thread-7] Initializing /data/converted/clown.seq: [testng] 02:45:43,075 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:45:43,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,076 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_02-45-43.log] [testng] 02:45:43,077 |-INFO in ch.qos.logback.core.sift.SiftProcessor@825e653 - End of configuration. [testng] [2024-04-25 02:45:43,089] [pool-1-thread-6] Initializing /data/converted/dub01.ipw: [testng] 02:45:43,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:45:43,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_02-45-43.log] [testng] 02:45:43,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@288b20a - End of configuration. [testng] [2024-04-25 02:45:43,121] [pool-1-thread-5] Initializing /data/converted/dub01.seq: [testng] 02:45:43,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:45:43,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_02-45-43.log] [testng] 02:45:43,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b1e2e18 - End of configuration. [testng] [2024-04-25 02:45:43,155] [pool-1-thread-4] Initializing /data/converted/mitosis-test.seq: [testng] 02:45:43,155 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:45:43,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_02-45-43.log] [testng] 02:45:43,157 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6555c15a - End of configuration. [testng] [2024-04-25 02:45:43,201] [pool-1-thread-3] Initializing /data/samples/PROBE.TIF: [testng] 02:45:43,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:45:43,201 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_02-45-43.log] [testng] 02:45:43,202 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c51a4e - End of configuration. [testng] [2024-04-25 02:45:43,223] [pool-1-thread-2] Initializing /data/converted/clown8c.tif: [testng] 02:45:43,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:45:43,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:43,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_02-45-43.log] [testng] 02:45:43,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e74effb - End of configuration. [testng] [2024-04-25 02:45:44,968] [pool-1-thread-4] Initializing /data/converted/NESb_C2_TP7.tiff: [testng] [2024-04-25 02:45:45,030] [pool-1-thread-10] Initializing /data/xiuwen/head2.seq: [testng] [2024-04-25 02:45:45,118] [pool-1-thread-7] Initializing /data/converted/clown8c.seq: [testng] [2024-04-25 02:45:45,128] [pool-1-thread-1] Initializing /data/converted/clown.tif: [testng] [2024-04-25 02:45:45,140] [pool-1-thread-2] Initializing /data/samples/TISSUE.TIF: [testng] [2024-04-25 02:45:45,172] [pool-1-thread-3] Initializing /data/converted/NESb_C2_TP7.seq: [testng] [2024-04-25 02:45:45,193] [pool-1-thread-5] Initializing /data/samples/HEART.SEQ: [testng] [2024-04-25 02:45:45,223] [pool-1-thread-6] Initializing /data/converted/mitosis-test.ipw: [testng] [2024-04-25 02:45:45,249] [pool-1-thread-9] Initializing /data/converted/dub01.pic: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 26 seconds Finished: SUCCESS