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Started by upstream project "BIOFORMATS-test-repo" build number 45 originally caused by: Started by upstream project "Trigger" build number 52 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8130750708817425457.sh + '[' lim = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6384_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:22:14,593 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:22:14,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:22:14,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:14,596 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:22:14,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:22:14,597 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:22:14,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:22:14,597 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:14,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:22:14,598 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:22:14,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:22:14,599 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:22:14,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:22:14,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:22:14,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:22:14,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:22:14,912 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:22:14,913 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:22:14,913 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:22:14,914 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:22:14,914 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:22:14,915 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:22:14,915 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 317 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-26 01:22:14,928] [main] java.version = 1.8.0_342 [testng] 01:22:14,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:22:14,933 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:14,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-26_01-22-14.log] [testng] 01:22:14,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-04-26 01:22:14,994] [main] testng.directory = /data [testng] [2024-04-26 01:22:14,995] [main] testng.configDirectory = /config [testng] [2024-04-26 01:22:15,016] [main] testng.multiplier = 1.0 [testng] [2024-04-26 01:22:15,017] [main] testng.in-memory = false [testng] [2024-04-26 01:22:15,018] [main] testng.allow-missing = false [testng] [2024-04-26 01:22:15,018] [main] user.language = en [testng] [2024-04-26 01:22:15,018] [main] user.country = ${user.country} [testng] [2024-04-26 01:22:15,018] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-04-26 01:22:15,519] [main] ---------------------------------------- [testng] [2024-04-26 01:22:15,519] [main] Total files: 21 [testng] [2024-04-26 01:22:15,519] [main] Scan time: 0.5 s (23 ms/file) [testng] [2024-04-26 01:22:15,520] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-26 01:22:17,053] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 01:22:17,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:22:17,053 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,054 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-26_01-22-17.log] [testng] 01:22:17,054 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52d8ef21 - End of configuration. [testng] [2024-04-26 01:22:17,240] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 01:22:17,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:22:17,240 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,241 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-26_01-22-17.log] [testng] 01:22:17,242 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62007d9 - End of configuration. [testng] [2024-04-26 01:22:17,266] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 01:22:17,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:22:17,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,267 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-26_01-22-17.log] [testng] 01:22:17,268 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cfa8e5f - End of configuration. [testng] [2024-04-26 01:22:17,427] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 01:22:17,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:22:17,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-26_01-22-17.log] [testng] 01:22:17,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b91ccc9 - End of configuration. [testng] [2024-04-26 01:22:17,455] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 01:22:17,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:22:17,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-26_01-22-17.log] [testng] 01:22:17,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7718d95c - End of configuration. [testng] [2024-04-26 01:22:17,472] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 01:22:17,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:22:17,473 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-26_01-22-17.log] [testng] 01:22:17,474 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f479181 - End of configuration. [testng] [2024-04-26 01:22:17,487] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 01:22:17,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:22:17,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-26_01-22-17.log] [testng] 01:22:17,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@459edb44 - End of configuration. [testng] [2024-04-26 01:22:17,506] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 01:22:17,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:22:17,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-26_01-22-17.log] [testng] 01:22:17,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@971fb13 - End of configuration. [testng] [2024-04-26 01:22:17,526] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 01:22:17,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:22:17,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-26_01-22-17.log] [testng] 01:22:17,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3559699d - End of configuration. [testng] [2024-04-26 01:22:17,547] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 01:22:17,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:22:17,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-26_01-22-17.log] [testng] 01:22:17,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78dd0626 - End of configuration. [testng] [2024-04-26 01:22:17,564] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 01:22:17,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:22:17,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,566 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-26_01-22-17.log] [testng] 01:22:17,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b4c15c9 - End of configuration. [testng] [2024-04-26 01:22:17,593] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 01:22:17,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:22:17,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:22:17,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-26_01-22-17.log] [testng] 01:22:17,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a246496 - End of configuration. [testng] [2024-04-26 01:22:20,429] [pool-1-thread-7] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-04-26 01:22:20,442] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-04-26 01:22:20,455] [pool-1-thread-11] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-04-26 01:22:20,468] [pool-1-thread-4] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-04-26 01:22:20,482] [pool-1-thread-6] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-04-26 01:22:20,498] [pool-1-thread-10] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-04-26 01:22:20,512] [pool-1-thread-1] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-04-26 01:22:20,530] [pool-1-thread-12] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS