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Started by upstream project "BIOFORMATS-test-repo" build number 5 originally caused by: Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins14957479658579275153.sh + '[' lim = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_641_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:21:13,559 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:21:13,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:21:13,561 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:13,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:21:13,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:21:13,562 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:21:13,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:21:13,562 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:13,563 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:21:13,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:21:13,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:21:13,563 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:21:13,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:21:13,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:21:13,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:21:13,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:21:13,816 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:21:13,816 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:21:13,816 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:21:13,817 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:21:13,817 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:21:13,818 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:21:13,818 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 255 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-18 00:21:13,827] [main] java.version = 1.8.0_342 [testng] 00:21:13,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:21:13,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:13,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_00-21-13.log] [testng] 00:21:13,876 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-18 00:21:13,878] [main] testng.directory = /data [testng] [2024-03-18 00:21:13,878] [main] testng.configDirectory = /config [testng] [2024-03-18 00:21:13,890] [main] testng.multiplier = 1.0 [testng] [2024-03-18 00:21:13,891] [main] testng.in-memory = false [testng] [2024-03-18 00:21:13,891] [main] testng.allow-missing = false [testng] [2024-03-18 00:21:13,891] [main] user.language = fr [testng] [2024-03-18 00:21:13,891] [main] user.country = FR [testng] [2024-03-18 00:21:13,891] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-18 00:21:14,332] [main] ---------------------------------------- [testng] [2024-03-18 00:21:14,332] [main] Total files: 21 [testng] [2024-03-18 00:21:14,332] [main] Scan time: 0.441 s (21 ms/file) [testng] [2024-03-18 00:21:14,332] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-18 00:21:18,170] [pool-1-thread-1] Initializing /data/venu/Kontrolle0015.lim: [testng] 00:21:18,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:21:18,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:18,171 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_00-21-18.log] [testng] 00:21:18,172 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5444ce93 - End of configuration. [testng] [2024-03-18 00:21:18,381] [pool-1-thread-12] Initializing /data/venu/Kontrolle0020.lim: [testng] 00:21:18,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:21:18,382 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:18,382 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_00-21-18.log] [testng] 00:21:18,383 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4aeadce9 - End of configuration. [testng] [2024-03-18 00:21:18,562] [pool-1-thread-11] Initializing /data/venu/Kontrolle0019.lim: [testng] 00:21:18,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:21:18,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:18,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_00-21-18.log] [testng] 00:21:18,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63fafe08 - End of configuration. [testng] [2024-03-18 00:21:18,728] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] 00:21:18,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:21:18,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:18,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_00-21-18.log] [testng] 00:21:18,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c71cf63 - End of configuration. [testng] [2024-03-18 00:21:18,910] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] 00:21:18,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:21:18,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:18,911 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_00-21-18.log] [testng] 00:21:18,912 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7df16fa3 - End of configuration. [testng] [2024-03-18 00:21:19,083] [pool-1-thread-8] Initializing /data/venu/Kontrolle0008.lim: [testng] 00:21:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:21:19,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_00-21-19.log] [testng] 00:21:19,085 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26e14c73 - End of configuration. [testng] [2024-03-18 00:21:19,237] [pool-1-thread-7] Initializing /data/venu/Kontrolle0001.lim: [testng] 00:21:19,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:21:19,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_00-21-19.log] [testng] 00:21:19,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c3bb7ee - End of configuration. [testng] [2024-03-18 00:21:19,382] [pool-1-thread-6] Initializing /data/venu/Kontrolle0003.lim: [testng] 00:21:19,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:21:19,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_00-21-19.log] [testng] 00:21:19,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b4c15c9 - End of configuration. [testng] [2024-03-18 00:21:19,475] [pool-1-thread-5] Initializing /data/venu/Kontrolle0012.lim: [testng] 00:21:19,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:21:19,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_00-21-19.log] [testng] 00:21:19,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a246496 - End of configuration. [testng] [2024-03-18 00:21:19,562] [pool-1-thread-4] Initializing /data/venu/Kontrolle0009.lim: [testng] 00:21:19,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:21:19,562 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_00-21-19.log] [testng] 00:21:19,563 |-INFO in ch.qos.logback.core.sift.SiftProcessor@51386736 - End of configuration. [testng] [2024-03-18 00:21:19,639] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 00:21:19,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:21:19,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,640 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_00-21-19.log] [testng] 00:21:19,641 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b7af3b5 - End of configuration. [testng] [2024-03-18 00:21:19,719] [pool-1-thread-2] Initializing /data/venu/Kontrolle0005.lim: [testng] 00:21:19,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:21:19,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:21:19,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_00-21-19.log] [testng] 00:21:19,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@689e84a8 - End of configuration. [testng] [2024-03-18 00:21:22,830] [pool-1-thread-6] Initializing /data/venu/Kontrolle0018.lim: [testng] [2024-03-18 00:21:22,902] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim: [testng] [2024-03-18 00:21:22,975] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] [2024-03-18 00:21:23,059] [pool-1-thread-3] Initializing /data/venu/Kontrolle0004.lim: [testng] [2024-03-18 00:21:23,141] [pool-1-thread-4] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-03-18 00:21:23,224] [pool-1-thread-7] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-03-18 00:21:23,329] [pool-1-thread-10] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-03-18 00:21:23,403] [pool-1-thread-9] Initializing /data/venu/Kontrolle0021.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS