Skip to content
[Jenkins]Jenkins
log in

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 46
originally caused by:
 Started by upstream project "Trigger" build number 53
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5
[BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins708679970614109048.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6679_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:40:43,383 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:40:43,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:40:43,450 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:40:43,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:40:43,461 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:40:43,462 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:40:43,462 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:40:43,463 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:40:43,463 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 02:40:43,464 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 02:40:43,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 640 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-27 02:40:43,481] [main] java.version = 11.0.16
   [testng] 02:40:43,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:40:43,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:43,541 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-27_02-40-43.log]
   [testng] 02:40:43,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-27 02:40:43,570] [main] testng.directory = /data
   [testng] [2024-04-27 02:40:43,570] [main] testng.configDirectory = /config
   [testng] [2024-04-27 02:40:43,587] [main] testng.multiplier = 1.0
   [testng] [2024-04-27 02:40:43,588] [main] testng.in-memory = false
   [testng] [2024-04-27 02:40:43,588] [main] testng.allow-missing = false
   [testng] [2024-04-27 02:40:43,588] [main] user.language = en
   [testng] [2024-04-27 02:40:43,588] [main] user.country = ${user.country}
   [testng] [2024-04-27 02:40:43,589] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-27 02:40:44,122] [main] ----------------------------------------
   [testng] [2024-04-27 02:40:44,123] [main] Total files: 11
   [testng] [2024-04-27 02:40:44,123] [main] Scan time: 0.533 s (48 ms/file)
   [testng] [2024-04-27 02:40:44,123] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-27 02:40:46,084] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008R.tif: 
   [testng] 02:40:46,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:40:46,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-27_02-40-46.log]
   [testng] 02:40:46,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f1c5df0 - End of configuration.
   [testng] [2024-04-27 02:40:46,156] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2: 
   [testng] 02:40:46,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:40:46,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,158 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-27_02-40-46.log]
   [testng] 02:40:46,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b8e7290 - End of configuration.
   [testng] [2024-04-27 02:40:46,346] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed008G.tif: 
   [testng] 02:40:46,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:40:46,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,347 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-27_02-40-46.log]
   [testng] 02:40:46,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e67c57b - End of configuration.
   [testng] [2024-04-27 02:40:46,406] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: 
   [testng] 02:40:46,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:40:46,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-27_02-40-46.log]
   [testng] 02:40:46,408 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5884cc54 - End of configuration.
   [testng] [2024-04-27 02:40:46,419] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed005.bmp: 
   [testng] 02:40:46,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:40:46,419 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,420 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-27_02-40-46.log]
   [testng] 02:40:46,420 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e3e768 - End of configuration.
   [testng] [2024-04-27 02:40:46,430] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed007.gif: 
   [testng] 02:40:46,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:40:46,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-27_02-40-46.log]
   [testng] 02:40:46,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e350ffe - End of configuration.
   [testng] [2024-04-27 02:40:46,465] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008B.tif: 
   [testng] 02:40:46,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:40:46,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,466 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-27_02-40-46.log]
   [testng] 02:40:46,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c04ed70 - End of configuration.
   [testng] [2024-04-27 02:40:46,557] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed004.tif: 
   [testng] 02:40:46,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:40:46,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,559 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-27_02-40-46.log]
   [testng] 02:40:46,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@183eb44d - End of configuration.
   [testng] [2024-04-27 02:40:46,648] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed008BGR.tif: 
   [testng] 02:40:46,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:40:46,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-27_02-40-46.log]
   [testng] 02:40:46,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165f11f2 - End of configuration.
   [testng] [2024-04-27 02:40:46,702] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed003.jpg: 
   [testng] 02:40:46,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:40:46,702 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,703 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-27_02-40-46.log]
   [testng] 02:40:46,703 |-INFO in ch.qos.logback.core.sift.SiftProcessor@254febe - End of configuration.
   [testng] [2024-04-27 02:40:46,765] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: 
   [testng] 02:40:46,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:40:46,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:40:46,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-27_02-40-46.log]
   [testng] 02:40:46,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1722a4c2 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 22 seconds
Finished: SUCCESS