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Started by upstream project "BIOFORMATS-test-repo" build number 46 originally caused by: Started by upstream project "Trigger" build number 53 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5598746603211190369.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_6688_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:45:24,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:45:24,040 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:45:24,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:45:24,061 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:45:24,067 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:45:24,067 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:45:24,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:45:24,067 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:45:24,067 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:45:24,068 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:45:24,068 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 409 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-04-27 02:45:24,077] [main] java.version = 11.0.16 [testng] 02:45:24,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:45:24,081 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:24,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-27_02-45-24.log] [testng] 02:45:24,124 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-04-27 02:45:24,126] [main] testng.directory = /data [testng] [2024-04-27 02:45:24,126] [main] testng.configDirectory = /config [testng] [2024-04-27 02:45:24,136] [main] testng.multiplier = 1.0 [testng] [2024-04-27 02:45:24,137] [main] testng.in-memory = false [testng] [2024-04-27 02:45:24,137] [main] testng.allow-missing = false [testng] [2024-04-27 02:45:24,137] [main] user.language = en [testng] [2024-04-27 02:45:24,137] [main] user.country = ${user.country} [testng] [2024-04-27 02:45:24,137] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-04-27 02:45:25,230] [main] ---------------------------------------- [testng] [2024-04-27 02:45:25,231] [main] Total files: 17 [testng] [2024-04-27 02:45:25,231] [main] Scan time: 1.093 s (64 ms/file) [testng] [2024-04-27 02:45:25,231] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-04-27 02:45:26,291] [pool-1-thread-1] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 02:45:26,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:45:26,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,293 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-27_02-45-26.log] [testng] 02:45:26,294 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c4b4e19 - End of configuration. [testng] [2024-04-27 02:45:26,330] [pool-1-thread-12] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 02:45:26,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:45:26,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-27_02-45-26.log] [testng] 02:45:26,332 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ae1f0ab - End of configuration. [testng] [2024-04-27 02:45:26,342] [pool-1-thread-11] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 02:45:26,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:45:26,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,343 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-27_02-45-26.log] [testng] 02:45:26,344 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cd0fe98 - End of configuration. [testng] [2024-04-27 02:45:26,366] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 02:45:26,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:45:26,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-27_02-45-26.log] [testng] 02:45:26,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bd5ebee - End of configuration. [testng] [2024-04-27 02:45:26,383] [pool-1-thread-9] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 02:45:26,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:45:26,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,384 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-27_02-45-26.log] [testng] 02:45:26,385 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20f1590e - End of configuration. [testng] [2024-04-27 02:45:26,404] [pool-1-thread-8] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 02:45:26,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:45:26,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,405 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-27_02-45-26.log] [testng] 02:45:26,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6370a348 - End of configuration. [testng] [2024-04-27 02:45:26,427] [pool-1-thread-7] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 02:45:26,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:45:26,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-27_02-45-26.log] [testng] 02:45:26,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d938d13 - End of configuration. [testng] [2024-04-27 02:45:26,443] [pool-1-thread-6] Initializing /data/christopher/Color48 Copy.ipm: [testng] 02:45:26,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:45:26,443 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,444 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-27_02-45-26.log] [testng] 02:45:26,444 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fb89238 - End of configuration. [testng] [2024-04-27 02:45:26,462] [pool-1-thread-5] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 02:45:26,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:45:26,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-27_02-45-26.log] [testng] 02:45:26,463 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7142528d - End of configuration. [testng] [2024-04-27 02:45:26,483] [pool-1-thread-4] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 02:45:26,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:45:26,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,484 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-27_02-45-26.log] [testng] 02:45:26,484 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aa33245 - End of configuration. [testng] [2024-04-27 02:45:26,497] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 02:45:26,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:45:26,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-27_02-45-26.log] [testng] 02:45:26,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bbe030 - End of configuration. [testng] [2024-04-27 02:45:26,510] [pool-1-thread-2] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 02:45:26,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:45:26,511 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:45:26,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-27_02-45-26.log] [testng] 02:45:26,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@107fad6a - End of configuration. [testng] [2024-04-27 02:45:28,020] [pool-1-thread-12] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2024-04-27 02:45:28,048] [pool-1-thread-4] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] [2024-04-27 02:45:28,087] [pool-1-thread-3] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [2024-04-27 02:45:28,097] [pool-1-thread-9] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] [2024-04-27 02:45:28,113] [pool-1-thread-8] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS