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Started by upstream project "BIOFORMATS-test-repo" build number 53 originally caused by: Started by upstream project "Trigger" build number 60 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins15848197472416898780.sh + '[' leica-xlef-lof = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_7761_merge_ci -v /uod/idr/repos/curated/leica-xlef-lof:/data -v /uod/idr-scratch/merge-ci/curated/leica-xlef-lof:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 01:51:07,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:51:07,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 01:51:07,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:07,513 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:51:07,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:51:07,514 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:51:07,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:51:07,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:07,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:51:07,516 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:51:07,516 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:51:07,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:51:07,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:51:07,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:51:07,767 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:51:07,768 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:51:07,774 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:51:07,774 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:51:07,774 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:51:07,775 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:51:07,775 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 01:51:07,776 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 01:51:07,776 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-04 01:51:07,785] [main] java.version = 11.0.16 [testng] 01:51:07,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:51:07,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:51:07,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-04_01-51-07.log] [testng] 01:51:07,836 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-04 01:51:07,840] [main] testng.directory = /data [testng] [2024-05-04 01:51:07,840] [main] testng.configDirectory = /config [testng] [2024-05-04 01:51:07,853] [main] testng.multiplier = 1.0 [testng] [2024-05-04 01:51:07,854] [main] testng.in-memory = false [testng] [2024-05-04 01:51:07,854] [main] testng.allow-missing = false [testng] [2024-05-04 01:51:07,855] [main] user.language = en [testng] [2024-05-04 01:51:07,855] [main] user.country = ${user.country} [testng] [2024-05-04 01:51:07,855] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-04 01:54:56,222] [main] ---------------------------------------- [testng] [2024-05-04 01:54:56,223] [main] Total files: 3950 [testng] [2024-05-04 01:54:56,223] [main] Scan time: 228.367 s (57 ms/file) [testng] [2024-05-04 01:54:56,223] [main] ---------------------------------------- [testng] [2024-05-04 01:54:57,915] [main] setId("/data/leica/format-test/format-test.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 14 out of bounds for length 13 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 01:58:41,410] [main] setId("/data/public/annotated XYCZT dimensions/XLEF-TIF annotated XYCZT dimensions/annotated dimensions.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 19 out of bounds for length 19 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:08,716] [main] setId("/data/public/lif/confocal LIFs/2020_06_23_sample 3 U2OS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 38 out of bounds for length 7 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,015] [main] setId("/data/public/lif/confocal LIFs/2020_06_23_sample 3 U2OS.lifext") failed [testng] java.lang.NullPointerException: null [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LMSXmlDocument.GetChildWithName(LMSXmlDocument.java:260) [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LifXmlDocument.GetImageChildren(LifXmlDocument.java:67) [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LifXmlDocument.getImageXmlDocuments(LifXmlDocument.java:54) [testng] at loci.formats.in.LMSLIFReader.initMetadata(LMSLIFReader.java:494) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:447) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,159] [main] setId("/data/public/lif/confocal LIFs/Lysosomes_actin_in_motion.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 51 out of bounds for length 3 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,384] [main] setId("/data/public/lif/confocal LIFs/MaF in LDM 12bit 3s z5.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 55 out of bounds for length 8 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,591] [main] setId("/data/public/lif/confocal LIFs/MaF in Navigator 12bit 3s z5.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 63 out of bounds for length 5 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,693] [main] setId("/data/public/lif/confocal LIFs/MaF in Navigator 12bit 3s z5.lifext") failed [testng] java.lang.NullPointerException: null [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LMSXmlDocument.GetChildWithName(LMSXmlDocument.java:260) [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LifXmlDocument.GetImageChildren(LifXmlDocument.java:67) [testng] at loci.formats.in.LeicaMicrosystemsMetadata.xml.LifXmlDocument.getImageXmlDocuments(LifXmlDocument.java:54) [testng] at loci.formats.in.LMSLIFReader.initMetadata(LMSLIFReader.java:494) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:447) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,808] [main] setId("/data/public/lif/confocal LIFs/Paramecium RoAvrg 12kRS_selected.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 82 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,880] [main] setId("/data/public/lif/confocal LIFs/xyct 16bit 2ch t11.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 84 out of bounds for length 3 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:09,941] [main] setId("/data/public/lif/dimension tests LIFs/XYCS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 87 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,024] [main] setId("/data/public/lif/dimension tests LIFs/XYCST.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 89 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,081] [main] setId("/data/public/lif/dimension tests LIFs/XYCZS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 91 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,137] [main] setId("/data/public/lif/dimension tests LIFs/XYCZST.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 93 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,204] [main] setId("/data/public/lif/dimension tests LIFs/XYS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 95 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,275] [main] setId("/data/public/lif/dimension tests LIFs/XYST.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 97 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,341] [main] setId("/data/public/lif/dimension tests LIFs/XYZCS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 99 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,392] [main] setId("/data/public/lif/dimension tests LIFs/XYZCST.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 101 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,438] [main] setId("/data/public/lif/dimension tests LIFs/XYZS.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 103 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:10,484] [main] setId("/data/public/lif/dimension tests LIFs/XYZST.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 105 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:11,331] [main] setId("/data/public/lif/dimension tests LIFs/annotated dimensions.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 107 out of bounds for length 19 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:11,677] [main] setId("/data/public/lif/lifetime LIFs/falcon_sample_data_small.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 126 out of bounds for length 53 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:12,027] [main] setId("/data/public/lif/lifetime LIFs/tau_selection.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 179 out of bounds for length 6 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:12,342] [main] setId("/data/public/lif/other emulator image tests LIFs/collection test.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 185 out of bounds for length 11 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:12,685] [main] setId("/data/public/lif/other emulator image tests LIFs/format-test LIF.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 196 out of bounds for length 13 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:12,857] [main] setId("/data/public/lif/other emulator image tests LIFs/rgb channel test.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 209 out of bounds for length 7 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:13,147] [main] setId("/data/public/lif/widefield LIFs/Schnecke.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 217 out of bounds for length 7 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:01:13,216] [main] setId("/data/public/lif/widefield LIFs/Thunder Organoid Tilescan.lif") failed [testng] java.lang.IndexOutOfBoundsException: Index 223 out of bounds for length 2 [testng] at java.base/jdk.internal.util.Preconditions.outOfBounds(Preconditions.java:64) [testng] at java.base/jdk.internal.util.Preconditions.outOfBoundsCheckIndex(Preconditions.java:70) [testng] at java.base/jdk.internal.util.Preconditions.checkIndex(Preconditions.java:248) [testng] at java.base/java.util.Objects.checkIndex(Objects.java:372) [testng] at java.base/java.util.ArrayList.get(ArrayList.java:459) [testng] at loci.formats.in.LMSLIFReader.initFile(LMSLIFReader.java:461) [testng] at loci.formats.FormatReader.setId(FormatReader.java:1480) [testng] at loci.formats.in.LIFDelegateReader.setId(LIFDelegateReader.java:37) [testng] at loci.formats.ImageReader.setId(ImageReader.java:864) [testng] at loci.tests.testng.FormatReaderTestFactory.createInstances(FormatReaderTestFactory.java:251) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [testng] at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) [testng] at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [testng] at java.base/java.lang.reflect.Method.invoke(Method.java:566) [testng] at org.testng.internal.FactoryMethod.invoke(FactoryMethod.java:81) [testng] at org.testng.internal.TestNGClassFinder.<init>(TestNGClassFinder.java:140) [testng] at org.testng.TestRunner.initMethods(TestRunner.java:409) [testng] at org.testng.TestRunner.init(TestRunner.java:235) [testng] at org.testng.TestRunner.init(TestRunner.java:205) [testng] at org.testng.TestRunner.<init>(TestRunner.java:153) [testng] at org.testng.SuiteRunner$DefaultTestRunnerFactory.newTestRunner(SuiteRunner.java:522) [testng] at org.testng.SuiteRunner.init(SuiteRunner.java:157) [testng] at org.testng.SuiteRunner.<init>(SuiteRunner.java:111) [testng] at org.testng.TestNG.createSuiteRunner(TestNG.java:1273) [testng] at org.testng.TestNG.createSuiteRunners(TestNG.java:1260) [testng] at org.testng.TestNG.runSuitesLocally(TestNG.java:1114) [testng] at org.testng.TestNG.run(TestNG.java:1031) [testng] at org.testng.TestNG.privateMain(TestNG.java:1338) [testng] at org.testng.TestNG.main(TestNG.java:1307) [testng] [2024-05-04 02:02:54,708] [main] setId failed on [/data/leica/format-test/format-test.lif, /data/public/annotated XYCZT dimensions/XLEF-TIF annotated XYCZT dimensions/annotated dimensions.lif, /data/public/lif/confocal LIFs/2020_06_23_sample 3 U2OS.lif, /data/public/lif/confocal LIFs/2020_06_23_sample 3 U2OS.lifext, /data/public/lif/confocal LIFs/Lysosomes_actin_in_motion.lif, /data/public/lif/confocal LIFs/MaF in LDM 12bit 3s z5.lif, /data/public/lif/confocal LIFs/MaF in Navigator 12bit 3s z5.lif, /data/public/lif/confocal LIFs/MaF in Navigator 12bit 3s z5.lifext, /data/public/lif/confocal LIFs/Paramecium RoAvrg 12kRS_selected.lif, /data/public/lif/confocal LIFs/xyct 16bit 2ch t11.lif, /data/public/lif/dimension tests LIFs/XYCS.lif, /data/public/lif/dimension tests LIFs/XYCST.lif, /data/public/lif/dimension tests LIFs/XYCZS.lif, /data/public/lif/dimension tests LIFs/XYCZST.lif, /data/public/lif/dimension tests LIFs/XYS.lif, /data/public/lif/dimension tests LIFs/XYST.lif, /data/public/lif/dimension tests LIFs/XYZCS.lif, /data/public/lif/dimension tests LIFs/XYZCST.lif, /data/public/lif/dimension tests LIFs/XYZS.lif, /data/public/lif/dimension tests LIFs/XYZST.lif, /data/public/lif/dimension tests LIFs/annotated dimensions.lif, /data/public/lif/lifetime LIFs/falcon_sample_data_small.lif, /data/public/lif/lifetime LIFs/tau_selection.lif, /data/public/lif/other emulator image tests LIFs/collection test.lif, /data/public/lif/other emulator image tests LIFs/format-test LIF.lif, /data/public/lif/other emulator image tests LIFs/rgb channel test.lif, /data/public/lif/widefield LIFs/Schnecke.lif, /data/public/lif/widefield LIFs/Thunder Organoid Tilescan.lif] [testng] [TestNG] [Error] [testng] The factory method class loci.tests.testng.FormatReaderTestFactory.createInstances() threw an exception [testng] The tests failed. BUILD FAILED /bio-formats-build/bioformats/components/test-suite/build.xml:270: if=failedTest Total time: 11 minutes 50 seconds Build step 'Execute shell' marked build as failure Finished: FAILURE