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Started by upstream project "BIOFORMATS-test-repo" build number 53 originally caused by: Started by upstream project "Trigger" build number 60 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14854313267193786673.sh + '[' psd = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_7814_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:32:03,397 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:32:03,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service. [testng] 02:32:03,400 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:32:03,402 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:32:03,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:32:03,403 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:32:03,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:32:03,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:32:03,404 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:32:03,405 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:32:03,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:32:03,406 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:32:03,711 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:32:03,712 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:32:03,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:32:03,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:32:03,764 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:32:03,765 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:32:03,765 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:32:03,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:32:03,766 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration. [testng] 02:32:03,767 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point [testng] 02:32:03,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 363 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-04 02:32:03,780] [main] java.version = 11.0.16 [testng] 02:32:03,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:32:03,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:03,888 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-04_02-32-03.log] [testng] 02:32:03,890 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-04 02:32:03,912] [main] testng.directory = /data [testng] [2024-05-04 02:32:03,913] [main] testng.configDirectory = /config [testng] [2024-05-04 02:32:03,995] [main] testng.multiplier = 1.0 [testng] [2024-05-04 02:32:03,997] [main] testng.in-memory = false [testng] [2024-05-04 02:32:03,998] [main] testng.allow-missing = false [testng] [2024-05-04 02:32:03,998] [main] user.language = en [testng] [2024-05-04 02:32:03,998] [main] user.country = ${user.country} [testng] [2024-05-04 02:32:03,998] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-04 02:32:04,904] [main] ---------------------------------------- [testng] [2024-05-04 02:32:04,905] [main] Total files: 18 [testng] [2024-05-04 02:32:04,905] [main] Scan time: 0.906 s (50 ms/file) [testng] [2024-05-04 02:32:04,905] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-04 02:32:06,877] [pool-1-thread-1] Initializing /data/misc/glossy_buttons.psd: [testng] 02:32:06,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:32:06,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:06,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-04_02-32-06.log] [testng] 02:32:06,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54c9c785 - End of configuration. [testng] [2024-05-04 02:32:06,926] [pool-1-thread-12] Initializing /data/ascb/423.psd: [testng] 02:32:06,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:32:06,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:06,929 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-04_02-32-06.log] [testng] 02:32:06,930 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43043779 - End of configuration. [testng] [2024-05-04 02:32:07,043] [pool-1-thread-11] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:32:07,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:32:07,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-04_02-32-07.log] [testng] 02:32:07,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec824c0 - End of configuration. [testng] [2024-05-04 02:32:07,215] [pool-1-thread-10] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:32:07,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:32:07,216 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,217 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-04_02-32-07.log] [testng] 02:32:07,218 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25cfda94 - End of configuration. [testng] [2024-05-04 02:32:07,279] [pool-1-thread-9] Initializing /data/cris/house.tif: [testng] 02:32:07,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:32:07,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,281 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-04_02-32-07.log] [testng] 02:32:07,282 |-INFO in ch.qos.logback.core.sift.SiftProcessor@182319d1 - End of configuration. [testng] [2024-05-04 02:32:07,339] [pool-1-thread-8] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 02:32:07,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:32:07,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,341 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-04_02-32-07.log] [testng] 02:32:07,342 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f0ae6d7 - End of configuration. [testng] [2024-05-04 02:32:07,447] [pool-1-thread-7] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:32:07,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:32:07,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,448 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-04_02-32-07.log] [testng] 02:32:07,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7931bb41 - End of configuration. [testng] [2024-05-04 02:32:07,495] [pool-1-thread-6] Initializing /data/misc/smilie.psd: [testng] 02:32:07,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:32:07,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-04_02-32-07.log] [testng] 02:32:07,498 |-INFO in ch.qos.logback.core.sift.SiftProcessor@538adf4a - End of configuration. [testng] [2024-05-04 02:32:07,569] [pool-1-thread-5] Initializing /data/misc/glossy_orbs.psd: [testng] 02:32:07,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:32:07,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,574 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-04_02-32-07.log] [testng] 02:32:07,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b9653c1 - End of configuration. [testng] [2024-05-04 02:32:07,595] [pool-1-thread-4] Initializing /data/ascb/607x.psd: [testng] 02:32:07,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:32:07,595 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-04_02-32-07.log] [testng] 02:32:07,596 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17ca2f6e - End of configuration. [testng] [2024-05-04 02:32:07,727] [pool-1-thread-3] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:32:07,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:32:07,728 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,729 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-04_02-32-07.log] [testng] 02:32:07,731 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b30aa9c - End of configuration. [testng] [2024-05-04 02:32:07,901] [pool-1-thread-2] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:32:07,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:32:07,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:32:07,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-04_02-32-07.log] [testng] 02:32:07,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@145d8751 - End of configuration. [testng] [2024-05-04 02:32:11,592] [pool-1-thread-5] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-05-04 02:32:11,679] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd: [testng] [2024-05-04 02:32:11,696] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] [2024-05-04 02:32:11,749] [pool-1-thread-1] Initializing /data/big-images/8kx8k.psd: [testng] [2024-05-04 02:32:11,781] [pool-1-thread-6] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-05-04 02:32:12,457] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 40 seconds Finished: SUCCESS