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Started by upstream project "BIOFORMATS-test-repo" build number 54 originally caused by: Started by upstream project "Trigger" build number 61 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins9636667499593028890.sh + '[' sis = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_7927_merge_ci -v /uod/idr/repos/curated/sis:/data -v /uod/idr-scratch/merge-ci/curated/sis:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 01:54:03,786 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:54:03,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:54:03,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:54:03,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:54:03,886 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:54:03,886 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:54:03,886 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:54:03,886 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:54:03,886 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5e600dd5 - End of configuration. [testng] 01:54:03,887 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@a38c7fe - Registering current configuration as safe fallback point [testng] 01:54:03,887 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6fdbe764 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 478 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-05 01:54:03,898] [main] java.version = 17.0.2 [testng] 01:54:03,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:54:03,901 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:04,166 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-05_01-54-04.log] [testng] 01:54:04,167 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-05-05 01:54:04,230] [main] testng.directory = /data [testng] [2024-05-05 01:54:04,231] [main] testng.configDirectory = /config [testng] [2024-05-05 01:54:04,284] [main] testng.multiplier = 1.0 [testng] [2024-05-05 01:54:04,286] [main] testng.in-memory = false [testng] [2024-05-05 01:54:04,286] [main] testng.allow-missing = false [testng] [2024-05-05 01:54:04,286] [main] user.language = en [testng] [2024-05-05 01:54:04,286] [main] user.country = ${user.country} [testng] [2024-05-05 01:54:04,286] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-05 01:54:05,371] [main] ---------------------------------------- [testng] [2024-05-05 01:54:05,371] [main] Total files: 13 [testng] [2024-05-05 01:54:05,371] [main] Scan time: 1.085 s (83 ms/file) [testng] [2024-05-05 01:54:05,371] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-05 01:54:07,397] [pool-1-thread-1] Initializing /data/pki/Tv2.tif: [testng] 01:54:07,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:54:07,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,399 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-05_01-54-07.log] [testng] 01:54:07,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46507488 - End of configuration. [testng] [2024-05-05 01:54:07,480] [pool-1-thread-11] Initializing /data/russell/Arbacia 2week ADL.tif: [testng] 01:54:07,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:54:07,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-05_01-54-07.log] [testng] 01:54:07,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c53376d - End of configuration. [testng] [2024-05-05 01:54:07,577] [pool-1-thread-10] Initializing /data/glen/L1468a-2_4_15000X.tif: [testng] 01:54:07,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:54:07,578 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-05_01-54-07.log] [testng] 01:54:07,579 |-INFO in ch.qos.logback.core.sift.SiftProcessor@428ddfb6 - End of configuration. [testng] [2024-05-05 01:54:07,642] [pool-1-thread-9] Initializing /data/glen/CG 3.31 15K.tif: [testng] 01:54:07,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:54:07,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-05_01-54-07.log] [testng] 01:54:07,644 |-INFO in ch.qos.logback.core.sift.SiftProcessor@197ddba6 - End of configuration. [testng] [2024-05-05 01:54:07,707] [pool-1-thread-8] Initializing /data/strand/FS44-1-254.tif: [testng] 01:54:07,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:54:07,707 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,708 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-05_01-54-07.log] [testng] 01:54:07,708 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5842f1bf - End of configuration. [testng] [2024-05-05 01:54:07,777] [pool-1-thread-7] Initializing /data/dimitri/ELN-ARM_00049_38.tif: [testng] 01:54:07,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:54:07,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-05_01-54-07.log] [testng] 01:54:07,779 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607f575a - End of configuration. [testng] [2024-05-05 01:54:07,850] [pool-1-thread-6] Initializing /data/glen/CG 3.31 20K.tif: [testng] 01:54:07,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:54:07,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-05_01-54-07.log] [testng] 01:54:07,852 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7583a5ef - End of configuration. [testng] [2024-05-05 01:54:07,919] [pool-1-thread-5] Initializing /data/strand/MIA.tif: [testng] 01:54:07,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:54:07,920 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,921 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-05_01-54-07.log] [testng] 01:54:07,921 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59c940e7 - End of configuration. [testng] [2024-05-05 01:54:07,989] [pool-1-thread-4] Initializing /data/glen/L1500k P_4_7500X.tif: [testng] 01:54:07,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:54:07,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:07,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-05_01-54-07.log] [testng] 01:54:07,991 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f7e8c8e - End of configuration. [testng] [2024-05-05 01:54:08,063] [pool-1-thread-3] Initializing /data/glen/L1500k P_3_7500X.tif: [testng] 01:54:08,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:54:08,064 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:08,064 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-05_01-54-08.log] [testng] 01:54:08,065 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7057ca89 - End of configuration. [testng] [2024-05-05 01:54:08,128] [pool-1-thread-2] Initializing /data/glen/CG 3.31 10K.tif: [testng] 01:54:08,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:54:08,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:54:08,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-05_01-54-08.log] [testng] 01:54:08,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d29ff2b - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 19 seconds Finished: SUCCESS