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Started by upstream project "BIOFORMATS-test-repo" build number 55 originally caused by: Started by upstream project "Trigger" build number 62 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6 [BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1160725800313377165.sh + '[' olympus-oir = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_8020_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:20:56,874 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:20:56,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:20:56,876 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:56,877 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:20:56,877 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:20:56,878 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:20:56,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:20:56,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:56,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:20:56,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:20:56,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:20:56,880 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:20:57,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:20:57,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:20:57,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:20:57,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:20:57,270 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:20:57,270 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:20:57,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:20:57,271 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:20:57,271 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:20:57,272 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:20:57,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 393 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-06 01:20:57,286] [main] java.version = 1.8.0_342 [testng] 01:20:57,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:20:57,292 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:20:57,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-06_01-20-57.log] [testng] 01:20:57,359 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-06 01:20:57,362] [main] testng.directory = /data [testng] [2024-05-06 01:20:57,362] [main] testng.configDirectory = /config [testng] [2024-05-06 01:20:57,380] [main] testng.multiplier = 1.0 [testng] [2024-05-06 01:20:57,380] [main] testng.in-memory = false [testng] [2024-05-06 01:20:57,380] [main] testng.allow-missing = false [testng] [2024-05-06 01:20:57,380] [main] user.language = fr [testng] [2024-05-06 01:20:57,380] [main] user.country = FR [testng] [2024-05-06 01:20:57,381] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-06 01:21:17,266] [main] ---------------------------------------- [testng] [2024-05-06 01:21:17,266] [main] Total files: 283 [testng] [2024-05-06 01:21:17,267] [main] Scan time: 19.885 s (70 ms/file) [testng] [2024-05-06 01:21:17,267] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 186 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-06 01:29:36,728] [pool-1-thread-1] Initializing /data/olympus/XYZt.oir: [testng] 01:29:36,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:29:36,729 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:36,730 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-06_01-29-36.log] [testng] 01:29:36,730 |-INFO in ch.qos.logback.core.sift.SiftProcessor@372232f4 - End of configuration. [testng] [2024-05-06 01:29:38,222] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir: [testng] 01:29:38,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:29:38,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:38,224 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-06_01-29-38.log] [testng] 01:29:38,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cfa7316 - End of configuration. [testng] [2024-05-06 01:29:38,319] [pool-1-thread-11] Initializing /data/qa-17270/alexa488.ome.tif: [testng] 01:29:38,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:29:38,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:38,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-06_01-29-38.log] [testng] 01:29:38,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@443060f2 - End of configuration. [testng] [2024-05-06 01:29:38,374] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/zebra shg.oir: [testng] 01:29:38,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:29:38,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:38,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-06_01-29-38.log] [testng] 01:29:38,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5582fcc5 - End of configuration. [testng] [2024-05-06 01:29:42,175] [pool-1-thread-9] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif: [testng] 01:29:42,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:29:42,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-06_01-29-42.log] [testng] 01:29:42,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@337d6b73 - End of configuration. [testng] [2024-05-06 01:29:42,236] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.oir: [testng] 01:29:42,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:29:42,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-06_01-29-42.log] [testng] 01:29:42,237 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f4730f3 - End of configuration. [testng] [2024-05-06 01:29:42,496] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir: [testng] 01:29:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:29:42,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-06_01-29-42.log] [testng] 01:29:42,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77440342 - End of configuration. [testng] [2024-05-06 01:29:42,717] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif: [testng] 01:29:42,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:29:42,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-06_01-29-42.log] [testng] 01:29:42,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b1ade65 - End of configuration. [testng] [2024-05-06 01:29:42,791] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir: [testng] 01:29:42,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:29:42,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:42,791 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-06_01-29-42.log] [testng] 01:29:42,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d2d6d9 - End of configuration. [testng] [2024-05-06 01:29:43,152] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif: [testng] 01:29:43,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:29:43,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:43,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-06_01-29-43.log] [testng] 01:29:43,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@763c851 - End of configuration. [testng] [2024-05-06 01:29:43,191] [pool-1-thread-3] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif: [testng] 01:29:43,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:29:43,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:43,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-06_01-29-43.log] [testng] 01:29:43,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50426401 - End of configuration. [testng] [2024-05-06 01:29:43,238] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi: [testng] 01:29:43,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:29:43,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:29:43,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-06_01-29-43.log] [testng] 01:29:43,239 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590f1e9f - End of configuration. [testng] [2024-05-06 01:29:45,369] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif: [testng] [2024-05-06 01:29:45,424] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir: [testng] [2024-05-06 01:29:46,105] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif: [testng] [2024-05-06 01:29:46,173] [pool-1-thread-12] Initializing /data/olympus/40X_4CH_XY.ome.tif: [testng] [2024-05-06 01:29:46,228] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif: [testng] [2024-05-06 01:29:46,266] [pool-1-thread-11] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir: [testng] [2024-05-06 01:29:47,002] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-image1.tif: [testng] [2024-05-06 01:29:47,880] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif: [testng] [2024-05-06 01:29:47,941] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif: [testng] [2024-05-06 01:29:48,206] [pool-1-thread-9] Initializing /data/qa-17409/Stitch_A01_G001.oir: [testng] [2024-05-06 01:29:49,788] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif: [testng] [2024-05-06 01:29:50,456] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif: [testng] [2024-05-06 01:29:50,522] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif: [testng] [2024-05-06 01:29:51,005] [pool-1-thread-6] Initializing /data/public/etienne/coupe shg stack_0001.oir: [testng] [2024-05-06 01:29:52,301] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir: [testng] [2024-05-06 01:29:53,055] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif: [testng] [2024-05-06 01:29:53,366] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir: [testng] [2024-05-06 01:29:53,570] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir: [testng] [2024-05-06 01:29:53,686] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif: [testng] [2024-05-06 01:29:53,853] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-alexa488.tif: [testng] [2024-05-06 01:29:54,182] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info: [testng] [2024-05-06 01:29:58,879] [pool-1-thread-2] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi: [testng] [2024-05-06 01:29:59,070] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir: [testng] [2024-05-06 01:29:59,368] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif: [testng] [2024-05-06 01:29:59,425] [pool-1-thread-4] Initializing /data/qa-17270/alexa488.oir: [testng] [2024-05-06 01:29:59,604] [pool-1-thread-2] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info: [testng] [2024-05-06 01:30:05,044] [pool-1-thread-11] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif: [testng] [2024-05-06 01:30:05,612] [pool-1-thread-12] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir: [testng] [2024-05-06 01:30:18,850] [pool-1-thread-3] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif: [testng] [2024-05-06 01:30:19,022] [pool-1-thread-7] Initializing /data/olympus/spectral_scan_XYL.ome.tif: [testng] [2024-05-06 01:30:19,470] [pool-1-thread-5] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif: [testng] [2024-05-06 01:30:20,250] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir: [testng] [2024-05-06 01:30:26,337] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0024.oir: [testng] [2024-05-06 01:30:28,168] [pool-1-thread-3] Initializing /data/qa-17917/f10010.oir: [testng] [2024-05-06 01:31:08,075] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2.ome.tif: [testng] [2024-05-06 01:31:08,170] [pool-1-thread-10] Initializing /data/qa-17293/2-z-t_0001_LSM.oir: [testng] [2024-05-06 01:31:08,584] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif: [testng] [2024-05-06 01:31:08,646] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif: [testng] [2024-05-06 01:31:08,845] [pool-1-thread-5] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir: [testng] [2024-05-06 01:31:10,418] [pool-1-thread-7] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir: [testng] [2024-05-06 01:31:13,489] [pool-1-thread-6] Initializing /data/olympus/Stitched_XYZ.vsi: [testng] [2024-05-06 01:31:13,600] [pool-1-thread-9] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets: [testng] [2024-05-06 01:31:14,547] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif: [testng] [2024-05-06 01:31:15,060] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif: [testng] [2024-05-06 01:31:15,527] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir: [testng] [2024-05-06 01:31:16,006] [pool-1-thread-10] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif: [testng] [2024-05-06 01:31:16,884] [pool-1-thread-6] Initializing /data/qa-21508/Stitch_A01_G008.oir: [testng] [2024-05-06 01:31:18,124] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir: [testng] [2024-05-06 01:31:20,755] [pool-1-thread-4] Initializing /data/qa-16881/P10-50 D2.oir: [testng] [2024-05-06 01:31:22,570] [pool-1-thread-5] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir: [testng] [2024-05-06 01:31:30,488] [pool-1-thread-9] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif: [testng] [2024-05-06 01:31:32,216] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir: [testng] [2024-05-06 01:31:34,018] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-venus stack.tif: [testng] [2024-05-06 01:31:35,238] [pool-1-thread-4] Initializing /data/qa-17335/1.oir: [testng] [2024-05-06 01:31:35,697] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif: [testng] [2024-05-06 01:31:36,064] [pool-1-thread-4] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif: [testng] [2024-05-06 01:31:37,397] [pool-1-thread-9] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif: [testng] [2024-05-06 01:31:38,294] [pool-1-thread-4] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir: [testng] [2024-05-06 01:31:39,098] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi: [testng] [2024-05-06 01:31:42,103] [pool-1-thread-9] Initializing /data/qa-17270/image1.ome.tif: [testng] [2024-05-06 01:31:43,628] [pool-1-thread-9] Initializing /data/qa-17270/stack1.ome.tif: [testng] [2024-05-06 01:31:44,085] [pool-1-thread-10] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir: [testng] [2024-05-06 01:35:19,170] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif: [testng] [2024-05-06 01:35:19,216] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif: [testng] [2024-05-06 01:35:20,709] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif: [testng] [2024-05-06 01:35:20,871] [pool-1-thread-7] Initializing /data/qa-17331/60x zstack RS.oir: [testng] [2024-05-06 01:35:21,394] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir: [testng] [2024-05-06 01:36:11,451] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif: [testng] [2024-05-06 01:36:13,428] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif: [testng] [2024-05-06 01:36:13,485] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif: [testng] [2024-05-06 01:36:14,072] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif: [testng] [2024-05-06 01:36:14,808] [pool-1-thread-9] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info: [testng] [2024-05-06 01:36:14,992] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi: [testng] [2024-05-06 01:36:15,727] [pool-1-thread-6] Initializing /data/qa-17331/60x zstack RS.ome.tif: [testng] [2024-05-06 01:36:16,365] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif: [testng] [2024-05-06 01:36:16,946] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif: [testng] [2024-05-06 01:36:17,668] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir: [testng] [2024-05-06 01:36:22,295] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif: [testng] [2024-05-06 01:36:22,579] [pool-1-thread-6] Initializing /data/public/etienne/venus stack.ome.tif: [testng] [2024-05-06 01:36:23,346] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif: [testng] [2024-05-06 01:36:23,671] [pool-1-thread-8] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif: [testng] [2024-05-06 01:36:23,777] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif: [testng] [2024-05-06 01:36:23,979] [pool-1-thread-9] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif: [testng] [2024-05-06 01:36:24,236] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir: [testng] [2024-05-06 01:36:28,837] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif: [testng] [2024-05-06 01:36:29,179] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif: [testng] [2024-05-06 01:36:29,501] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif: [testng] [2024-05-06 01:36:31,083] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif: [testng] [2024-05-06 01:36:31,251] [pool-1-thread-9] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif: [testng] [2024-05-06 01:36:31,447] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif: [testng] [2024-05-06 01:36:32,000] [pool-1-thread-7] Initializing /data/olympus/Stitched_XYZ.ome.tif: [testng] [2024-05-06 01:36:32,620] [pool-1-thread-4] Initializing 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/data/qa-17335/Clipboard-1.tif: [testng] [2024-05-06 01:36:55,969] [pool-1-thread-9] Initializing /data/qa-17922/example_multipart.oir: [testng] [2024-05-06 01:38:16,225] [pool-1-thread-8] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir: [testng] [2024-05-06 01:38:20,033] [pool-1-thread-8] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif: [testng] [2024-05-06 01:38:20,860] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif: [testng] [2024-05-06 01:38:21,587] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif: [testng] [2024-05-06 01:38:21,988] [pool-1-thread-11] Initializing /data/qa-17270/image1.oir: [testng] [2024-05-06 01:38:22,872] [pool-1-thread-11] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets: [testng] [2024-05-06 01:38:22,899] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif: [testng] [2024-05-06 01:38:24,142] [pool-1-thread-8] Initializing 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stack_0001.tif: [testng] [2024-05-06 01:38:29,007] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png: [testng] [2024-05-06 01:38:29,195] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif: [testng] [2024-05-06 01:38:29,268] [pool-1-thread-7] Initializing /data/cudmore/20190401__0005.oir: [testng] [2024-05-06 01:38:51,371] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif: [testng] [2024-05-06 01:38:51,425] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/Clipboard.tif: [testng] [2024-05-06 01:38:51,830] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir: [testng] [2024-05-06 01:38:52,464] [pool-1-thread-8] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info: [testng] [2024-05-06 01:39:06,713] [pool-1-thread-6] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir: [testng] [2024-05-06 01:39:07,381] [pool-1-thread-4] Initializing /data/olympus/XYZt.vsi: [testng] [2024-05-06 01:39:08,138] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir: [testng] [2024-05-06 01:39:08,723] [pool-1-thread-11] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif: [testng] [2024-05-06 01:39:09,005] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729.ome.tif: [testng] [2024-05-06 01:39:09,678] [pool-1-thread-6] Initializing /data/qa-17919/f10187.oir: [testng] [2024-05-06 01:40:17,861] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/Clipboard.tif: [testng] [2024-05-06 01:40:18,116] [pool-1-thread-1] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir: [testng] [2024-05-06 01:40:22,573] [pool-1-thread-11] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir: [testng] [2024-05-06 01:40:23,191] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir: [testng] [2024-05-06 01:40:23,912] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir: [testng] [2024-05-06 01:40:24,772] [pool-1-thread-4] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif: [testng] [2024-05-06 01:40:25,614] [pool-1-thread-11] Initializing /data/olympus/40X_4CH_XY.vsi: [testng] [2024-05-06 01:40:25,733] [pool-1-thread-12] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir: [testng] [2024-05-06 01:40:27,310] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir: [testng] [2024-05-06 01:40:32,803] [pool-1-thread-11] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir: [testng] [2024-05-06 01:41:24,794] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729.oir: [testng] [2024-05-06 01:41:27,452] [pool-1-thread-12] Initializing /data/olympus/calcium sparks_XYt.oir: [testng] [2024-05-06 01:41:44,005] [pool-1-thread-2] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir: [testng] [2024-05-06 01:41:52,028] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif: [testng] [2024-05-06 01:41:53,942] [pool-1-thread-4] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif: [testng] [2024-05-06 01:41:54,646] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif: [testng] [2024-05-06 01:41:55,813] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.ome.tif: [testng] [2024-05-06 01:41:59,798] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir: [testng] [2024-05-06 01:42:02,942] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif: [testng] [2024-05-06 01:42:04,280] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif: [testng] [2024-05-06 01:42:05,682] [pool-1-thread-4] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif: [testng] [2024-05-06 01:42:07,315] [pool-1-thread-4] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif: [testng] [2024-05-06 01:42:08,429] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif: [testng] [2024-05-06 01:42:09,129] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif: [testng] [2024-05-06 01:42:09,183] [pool-1-thread-1] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir: [testng] [2024-05-06 01:42:11,007] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif: [testng] [2024-05-06 01:42:11,527] [pool-1-thread-4] Initializing /data/qa-16881/P10D1 20150729_0019.oir: [testng] [2024-05-06 01:42:13,816] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif: [testng] [2024-05-06 01:42:14,411] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif: [testng] [2024-05-06 01:42:15,304] [pool-1-thread-5] Initializing /data/qa-17335/Clipboard-OSR-Z.tif: [testng] [2024-05-06 01:42:15,861] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir: [testng] [2024-05-06 01:42:16,311] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir: [testng] [2024-05-06 01:42:17,220] [pool-1-thread-1] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif: [testng] [2024-05-06 01:42:17,810] [pool-1-thread-5] Initializing /data/public/etienne/venus stack.oir: [testng] [2024-05-06 01:42:22,664] [pool-1-thread-12] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif: [testng] [2024-05-06 01:42:23,131] [pool-1-thread-2] Initializing /data/qa-17335/OSR-Z.oir: [testng] [2024-05-06 01:42:24,531] [pool-1-thread-11] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif: [testng] [2024-05-06 01:42:25,421] [pool-1-thread-12] Initializing /data/qa-17293/Clipboard.tif: [testng] [2024-05-06 01:42:25,529] [pool-1-thread-1] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif: [testng] [2024-05-06 01:42:26,506] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif: [testng] [2024-05-06 01:42:27,227] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir: [testng] [2024-05-06 01:42:27,916] [pool-1-thread-12] Initializing /data/public/etienne/amy slice z stack_0001.oir: [testng] [2024-05-06 01:42:28,876] [pool-1-thread-2] Initializing /data/olympus/spectral_scan_XYL.oir: [testng] 02:31:18,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:31:18,503 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:31:18,505 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-06_02-31-18.log] [testng] 02:31:18,506 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3327406e - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 9858, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 70 minutes 26 seconds Finished: SUCCESS