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Started by upstream project "BIOFORMATS-test-repo" build number 55 originally caused by: Started by upstream project "Trigger" build number 62 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9 [BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins6754257640982864774.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_8047_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:27:39,684 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:27:39,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:27:39,686 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:39,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:27:39,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:27:39,687 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:27:39,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:27:39,687 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:39,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:27:39,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:27:39,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:27:39,688 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:27:39,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:39,910 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:39,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:39,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:39,945 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:39,945 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:39,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:39,946 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:39,946 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:27:39,946 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:27:39,947 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 258 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-06 01:27:39,956] [main] java.version = 1.8.0_342 [testng] 01:27:39,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:39,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:40,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-06_01-27-39.log] [testng] 01:27:40,005 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-06 01:27:40,007] [main] testng.directory = /data [testng] [2024-05-06 01:27:40,007] [main] testng.configDirectory = /config [testng] [2024-05-06 01:27:40,019] [main] testng.multiplier = 1.0 [testng] [2024-05-06 01:27:40,019] [main] testng.in-memory = false [testng] [2024-05-06 01:27:40,019] [main] testng.allow-missing = false [testng] [2024-05-06 01:27:40,019] [main] user.language = fr [testng] [2024-05-06 01:27:40,019] [main] user.country = FR [testng] [2024-05-06 01:27:40,019] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-06 01:27:40,415] [main] ---------------------------------------- [testng] [2024-05-06 01:27:40,415] [main] Total files: 21 [testng] [2024-05-06 01:27:40,416] [main] Scan time: 0.395 s (18 ms/file) [testng] [2024-05-06 01:27:40,416] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-06 01:27:41,224] [pool-1-thread-1] Initializing /data/samples/XING_T16.TGA: [testng] 01:27:41,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:41,225 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,226 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-06_01-27-41.log] [testng] 01:27:41,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30a3af4d - End of configuration. [testng] [2024-05-06 01:27:41,244] [pool-1-thread-12] Initializing /data/samples/XING_B24.TGA: [testng] 01:27:41,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:41,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-06_01-27-41.log] [testng] 01:27:41,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55a3deb0 - End of configuration. [testng] [2024-05-06 01:27:41,284] [pool-1-thread-11] Initializing /data/samples/UTC32.TGA: [testng] 01:27:41,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:41,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,285 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-06_01-27-41.log] [testng] 01:27:41,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a630fbc - End of configuration. [testng] [2024-05-06 01:27:41,294] [pool-1-thread-10] Initializing /data/samples/UTC16.TGA: [testng] 01:27:41,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:41,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-06_01-27-41.log] [testng] 01:27:41,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration. [testng] [2024-05-06 01:27:41,303] [pool-1-thread-9] Initializing /data/samples/MARBLES.TGA: [testng] 01:27:41,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:41,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-06_01-27-41.log] [testng] 01:27:41,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@617d4ac4 - End of configuration. [testng] [2024-05-06 01:27:41,320] [pool-1-thread-8] Initializing /data/samples/FLAG_B16.TGA: [testng] 01:27:41,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:41,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-06_01-27-41.log] [testng] 01:27:41,322 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c2ed27a - End of configuration. [testng] [2024-05-06 01:27:41,329] [pool-1-thread-7] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:27:41,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:41,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-06_01-27-41.log] [testng] 01:27:41,330 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462d9521 - End of configuration. [testng] [2024-05-06 01:27:41,338] [pool-1-thread-6] Initializing /data/samples/UTC24.TGA: [testng] 01:27:41,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:41,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-06_01-27-41.log] [testng] 01:27:41,339 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6897c46b - End of configuration. [testng] [2024-05-06 01:27:41,347] [pool-1-thread-5] Initializing /data/samples/UCM8.TGA: [testng] 01:27:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:41,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-06_01-27-41.log] [testng] 01:27:41,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e805a3 - End of configuration. [testng] [2024-05-06 01:27:41,360] [pool-1-thread-4] Initializing /data/samples/CBW8.TGA: [testng] 01:27:41,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:41,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-06_01-27-41.log] [testng] 01:27:41,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79cc60a8 - End of configuration. [testng] [2024-05-06 01:27:41,368] [pool-1-thread-3] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:27:41,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:41,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-06_01-27-41.log] [testng] 01:27:41,370 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26b09b2 - End of configuration. [testng] [2024-05-06 01:27:41,379] [pool-1-thread-2] Initializing /data/samples/CTC16.TGA: [testng] 01:27:41,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:41,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:41,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-06_01-27-41.log] [testng] 01:27:41,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7717f9e4 - End of configuration. [testng] [2024-05-06 01:27:42,813] [pool-1-thread-5] Initializing /data/samples/UBW8.TGA: [testng] [2024-05-06 01:27:42,825] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA: [testng] [2024-05-06 01:27:42,835] [pool-1-thread-8] Initializing /data/samples/XING_B16.TGA: [testng] [2024-05-06 01:27:42,843] [pool-1-thread-3] Initializing /data/samples/CTC24.TGA: [testng] [2024-05-06 01:27:42,849] [pool-1-thread-2] Initializing /data/samples/FLAG_B24.TGA: [testng] [2024-05-06 01:27:42,856] [pool-1-thread-7] Initializing /data/samples/FLAG_T16.TGA: [testng] [2024-05-06 01:27:42,863] [pool-1-thread-11] Initializing /data/samples/XING_T32.TGA: [testng] [2024-05-06 01:27:42,870] [pool-1-thread-12] Initializing /data/samples/XING_B32.TGA: [testng] [2024-05-06 01:27:42,878] [pool-1-thread-1] Initializing /data/samples/XING_T24.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 6 seconds Finished: SUCCESS