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Started by upstream project "BIOFORMATS-test-repo" build number 6 originally caused by: Started by upstream project "Trigger" build number 9 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16292181543447729135.sh + '[' lim = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_805_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 09:40:28,124 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 09:40:28,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 09:40:28,125 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:40:28,126 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 09:40:28,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 09:40:28,127 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 09:40:28,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 09:40:28,127 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:40:28,128 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 09:40:28,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 09:40:28,128 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 09:40:28,129 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 09:40:28,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 09:40:28,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 09:40:28,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 09:40:28,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 09:40:28,316 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 09:40:28,316 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 09:40:28,316 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 09:40:28,316 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 09:40:28,316 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 09:40:28,317 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 09:40:28,317 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-20 09:40:28,325] [main] java.version = 17.0.2 [testng] 09:40:28,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 09:40:28,329 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:28,370 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_09-40-28.log] [testng] 09:40:28,371 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-20 09:40:28,373] [main] testng.directory = /data [testng] [2024-03-20 09:40:28,373] [main] testng.configDirectory = /config [testng] [2024-03-20 09:40:28,381] [main] testng.multiplier = 1.0 [testng] [2024-03-20 09:40:28,382] [main] testng.in-memory = false [testng] [2024-03-20 09:40:28,382] [main] testng.allow-missing = false [testng] [2024-03-20 09:40:28,382] [main] user.language = en [testng] [2024-03-20 09:40:28,383] [main] user.country = ${user.country} [testng] [2024-03-20 09:40:28,383] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-20 09:40:28,721] [main] ---------------------------------------- [testng] [2024-03-20 09:40:28,721] [main] Total files: 21 [testng] [2024-03-20 09:40:28,721] [main] Scan time: 0.338 s (16 ms/file) [testng] [2024-03-20 09:40:28,722] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 20 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-20 09:40:32,665] [pool-1-thread-1] Initializing /data/venu/Kontrolle0004.lim: [testng] 09:40:32,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 09:40:32,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:32,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_09-40-32.log] [testng] 09:40:32,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fd45eea - End of configuration. [testng] [2024-03-20 09:40:32,820] [pool-1-thread-12] Initializing /data/venu/Kontrolle0005.lim: [testng] 09:40:32,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 09:40:32,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:32,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_09-40-32.log] [testng] 09:40:32,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f20f3de - End of configuration. [testng] [2024-03-20 09:40:32,914] [pool-1-thread-11] Initializing /data/venu/Kontrolle0003.lim: [testng] 09:40:32,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 09:40:32,914 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:32,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_09-40-32.log] [testng] 09:40:32,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d56e6bd - End of configuration. [testng] [2024-03-20 09:40:32,999] [pool-1-thread-10] Initializing /data/venu/Kontrolle0019.lim: [testng] 09:40:32,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 09:40:32,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_09-40-33.log] [testng] 09:40:33,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0ab901 - End of configuration. [testng] [2024-03-20 09:40:33,103] [pool-1-thread-9] Initializing /data/venu/Kontrolle0012.lim: [testng] 09:40:33,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 09:40:33,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_09-40-33.log] [testng] 09:40:33,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dedd677 - End of configuration. [testng] [2024-03-20 09:40:33,175] [pool-1-thread-8] Initializing /data/venu/Kontrolle0010.lim: [testng] 09:40:33,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 09:40:33,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_09-40-33.log] [testng] 09:40:33,177 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b2af4bb - End of configuration. [testng] [2024-03-20 09:40:33,245] [pool-1-thread-7] Initializing /data/venu/Kontrolle0002.lim: [testng] 09:40:33,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 09:40:33,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_09-40-33.log] [testng] 09:40:33,246 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1baff8f3 - End of configuration. [testng] [2024-03-20 09:40:33,299] [pool-1-thread-6] Initializing /data/venu/Kontrolle0021.lim: [testng] 09:40:33,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 09:40:33,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,300 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_09-40-33.log] [testng] 09:40:33,300 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bd9b57 - End of configuration. [testng] [2024-03-20 09:40:33,348] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim: [testng] 09:40:33,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 09:40:33,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_09-40-33.log] [testng] 09:40:33,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3d91f - End of configuration. [testng] [2024-03-20 09:40:33,518] [pool-1-thread-4] Initializing /data/venu/Kontrolle0020.lim: [testng] 09:40:33,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 09:40:33,519 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_09-40-33.log] [testng] 09:40:33,520 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cff2c - End of configuration. [testng] [2024-03-20 09:40:33,589] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim: [testng] 09:40:33,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:40:33,590 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,591 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_09-40-33.log] [testng] 09:40:33,591 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b11b4a5 - End of configuration. [testng] [2024-03-20 09:40:33,661] [pool-1-thread-2] Initializing /data/venu/Kontrolle0018.lim: [testng] 09:40:33,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 09:40:33,662 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:40:33,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_09-40-33.log] [testng] 09:40:33,663 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration. [testng] [2024-03-20 09:40:36,944] [pool-1-thread-3] Initializing /data/venu/Kontrolle0007.lim: [testng] [2024-03-20 09:40:37,028] [pool-1-thread-6] Initializing /data/venu/Kontrolle0011.lim: [testng] [2024-03-20 09:40:37,102] [pool-1-thread-1] Initializing /data/venu/Kontrolle0008.lim: [testng] [2024-03-20 09:40:37,163] [pool-1-thread-7] Initializing /data/venu/Kontrolle0014.lim: [testng] [2024-03-20 09:40:37,602] [pool-1-thread-8] Initializing /data/venu/Kontrolle0009.lim: [testng] [2024-03-20 09:40:37,772] [pool-1-thread-9] Initializing /data/venu/Kontrolle0016.lim: [testng] [2024-03-20 09:40:37,917] [pool-1-thread-12] Initializing /data/venu/Kontrolle0015.lim: [testng] [2024-03-20 09:40:38,061] [pool-1-thread-10] Initializing /data/venu/Kontrolle0017.lim: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1060, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 16 seconds Finished: SUCCESS