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Started by upstream project "BIOFORMATS-test-repo" build number 55 originally caused by: Started by upstream project "Trigger" build number 62 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5297117446625322856.sh + '[' imaris = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_8126_merge_ci -v /uod/idr/repos/curated/imaris:/data -v /uod/idr-scratch/merge-ci/curated/imaris:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:21:36,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:21:36,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:21:36,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:36,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:21:36,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:21:36,645 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:21:36,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:21:36,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:36,646 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:21:36,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:21:36,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:21:36,647 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:21:36,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:21:36,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:21:36,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:21:36,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:21:36,920 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:21:36,921 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:21:36,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:21:36,921 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:21:36,921 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:21:36,922 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:21:36,922 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-06 02:21:36,933] [main] java.version = 1.8.0_342 [testng] 02:21:36,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:21:36,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:21:36,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-06_02-21-36.log] [testng] 02:21:36,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-06 02:21:36,992] [main] testng.directory = /data [testng] [2024-05-06 02:21:36,993] [main] testng.configDirectory = /config [testng] [2024-05-06 02:21:37,006] [main] testng.multiplier = 1.0 [testng] [2024-05-06 02:21:37,006] [main] testng.in-memory = false [testng] [2024-05-06 02:21:37,006] [main] testng.allow-missing = false [testng] [2024-05-06 02:21:37,006] [main] user.language = fr [testng] [2024-05-06 02:21:37,006] [main] user.country = FR [testng] [2024-05-06 02:21:37,006] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-06 02:21:46,218] [main] ---------------------------------------- [testng] [2024-05-06 02:21:46,218] [main] Total files: 67 [testng] [2024-05-06 02:21:46,219] [main] Scan time: 9.211 s (137 ms/file) [testng] [2024-05-06 02:21:46,219] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-06 02:22:14,769] [pool-1-thread-1] Initializing /data/public/davemason/Convallaria_3C_3T_2x2grid_confocal_IMS3.ims: [testng] 02:22:14,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:22:14,770 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,771 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-06_02-22-14.log] [testng] 02:22:14,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ecc63d - End of configuration. [testng] [2024-05-06 02:22:14,817] [pool-1-thread-12] Initializing /data/generated/10-31_E_t0008.ims: [testng] 02:22:14,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:22:14,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-06_02-22-14.log] [testng] 02:22:14,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@361d43a9 - End of configuration. [testng] [2024-05-06 02:22:14,908] [pool-1-thread-11] Initializing /data/generated/10-31_E_t0001.ims: [testng] 02:22:14,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:22:14,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-06_02-22-14.log] [testng] 02:22:14,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62b87b75 - End of configuration. [testng] [2024-05-06 02:22:14,926] [pool-1-thread-10] Initializing /data/chris/supMovie3.ims: [testng] 02:22:14,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:22:14,926 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-06_02-22-14.log] [testng] 02:22:14,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3da47814 - End of configuration. [testng] [2024-05-06 02:22:14,972] [pool-1-thread-9] Initializing /data/jason/imaris_5_5_demoimages/PyramidalCell.ims: [testng] 02:22:14,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:22:14,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:14,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-06_02-22-14.log] [testng] 02:22:14,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eb4ce44 - End of configuration. [testng] [2024-05-06 02:22:15,000] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0013.ims: [testng] 02:22:15,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:22:15,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-06_02-22-15.log] [testng] 02:22:15,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45fbca91 - End of configuration. [testng] [2024-05-06 02:22:15,014] [pool-1-thread-7] Initializing /data/generated/10-31_E_t0011.ims: [testng] 02:22:15,014 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:22:15,015 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,015 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-06_02-22-15.log] [testng] 02:22:15,016 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77091d57 - End of configuration. [testng] [2024-05-06 02:22:15,028] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0005.ims: [testng] 02:22:15,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:22:15,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-06_02-22-15.log] [testng] 02:22:15,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63b1fe05 - End of configuration. [testng] [2024-05-06 02:22:15,041] [pool-1-thread-5] Initializing /data/qa-17515/Organoid=1.ims: [testng] 02:22:15,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:22:15,041 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,042 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-06_02-22-15.log] [testng] 02:22:15,042 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6277c11a - End of configuration. [testng] [2024-05-06 02:22:15,118] [pool-1-thread-4] Initializing /data/jason/imaris_5_5_demoimages/R18Demo.ims: [testng] 02:22:15,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:22:15,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-06_02-22-15.log] [testng] 02:22:15,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b06caf1 - End of configuration. [testng] [2024-05-06 02:22:15,161] [pool-1-thread-3] Initializing /data/kay/Imaris503_test_Kay.ims: [testng] 02:22:15,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:22:15,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-06_02-22-15.log] [testng] 02:22:15,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cdc6c24 - End of configuration. [testng] [2024-05-06 02:22:15,222] [pool-1-thread-2] Initializing /data/jcb/fig 6B GFP-AP-2d.ims: [testng] 02:22:15,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:22:15,223 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:22:15,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-06_02-22-15.log] [testng] 02:22:15,224 |-INFO in ch.qos.logback.core.sift.SiftProcessor@692ef69f - End of configuration. [testng] [2024-05-06 02:22:17,344] [pool-1-thread-6] Initializing /data/generated/10-31_E_t0002.ims: [testng] [2024-05-06 02:22:17,356] [pool-1-thread-12] Initializing /data/qa-17522/2016-12-14_08.43.34_Sample Prefix_WAINWRIGHT James_Protocol.ims: [testng] [2024-05-06 02:22:24,869] [pool-1-thread-7] Initializing /data/oliver/Stack2_8Bit.ims: [testng] [2024-05-06 02:22:24,927] [pool-1-thread-11] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved_IMS3.ims: [testng] [2024-05-06 02:22:24,994] [pool-1-thread-8] Initializing /data/generated/10-31_E_t0014.ims: [testng] [2024-05-06 02:22:25,013] [pool-1-thread-9] Initializing /data/public/davemason/Convallaria_3C_3T_35Z_confocal_deconvolved.ims: [testng] [2024-05-06 02:22:25,042] [pool-1-thread-3] Initializing /data/qa-8019/wrong_num_dimensions.ims: [testng] [2024-05-06 02:22:25,081] [pool-1-thread-4] Initializing /data/generated/10-31_E_t0006.ims: BUILD SUCCESSFUL Total time: 2 minutes 9 seconds Finished: SUCCESS