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Started by upstream project "BIOFORMATS-test-repo" build number 55 originally caused by: Started by upstream project "Trigger" build number 62 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins16427591274727485268.sh + '[' psd = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_8142_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:37:11,517 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 02:37:11,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 02:37:11,519 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:37:11,520 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:37:11,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:37:11,521 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:37:11,521 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:37:11,521 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:37:11,522 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:37:11,522 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:37:11,522 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:37:11,522 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:37:11,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:37:11,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:37:11,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:37:11,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:37:11,838 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:37:11,839 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:37:11,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:37:11,839 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:37:11,839 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 02:37:11,840 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 02:37:11,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 318 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-06 02:37:11,851] [main] java.version = 1.8.0_342 [testng] 02:37:11,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:37:11,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:11,902 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-06_02-37-11.log] [testng] 02:37:11,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-06 02:37:11,905] [main] testng.directory = /data [testng] [2024-05-06 02:37:11,906] [main] testng.configDirectory = /config [testng] [2024-05-06 02:37:11,918] [main] testng.multiplier = 1.0 [testng] [2024-05-06 02:37:11,919] [main] testng.in-memory = false [testng] [2024-05-06 02:37:11,919] [main] testng.allow-missing = false [testng] [2024-05-06 02:37:11,919] [main] user.language = fr [testng] [2024-05-06 02:37:11,919] [main] user.country = FR [testng] [2024-05-06 02:37:11,919] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-06 02:37:12,376] [main] ---------------------------------------- [testng] [2024-05-06 02:37:12,376] [main] Total files: 18 [testng] [2024-05-06 02:37:12,376] [main] Scan time: 0.457 s (25 ms/file) [testng] [2024-05-06 02:37:12,377] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-06 02:37:14,348] [pool-1-thread-1] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 02:37:14,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:37:14,349 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-06_02-37-14.log] [testng] 02:37:14,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7976506d - End of configuration. [testng] [2024-05-06 02:37:14,377] [pool-1-thread-12] Initializing /data/misc/vig_drawing_1.psd: [testng] 02:37:14,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:37:14,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-06_02-37-14.log] [testng] 02:37:14,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fd743fe - End of configuration. [testng] [2024-05-06 02:37:14,400] [pool-1-thread-11] Initializing /data/misc/venus_composite_8bit.psd: [testng] 02:37:14,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:37:14,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-06_02-37-14.log] [testng] 02:37:14,402 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6546f795 - End of configuration. [testng] [2024-05-06 02:37:14,426] [pool-1-thread-10] Initializing /data/misc/smilie.psd: [testng] 02:37:14,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:37:14,427 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,427 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-06_02-37-14.log] [testng] 02:37:14,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@413a4b92 - End of configuration. [testng] [2024-05-06 02:37:14,444] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] 02:37:14,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:37:14,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-06_02-37-14.log] [testng] 02:37:14,446 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35d9a982 - End of configuration. [testng] [2024-05-06 02:37:14,465] [pool-1-thread-8] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 02:37:14,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:37:14,465 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,467 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-06_02-37-14.log] [testng] 02:37:14,467 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2896de06 - End of configuration. [testng] [2024-05-06 02:37:14,496] [pool-1-thread-7] Initializing /data/ascb/607x.psd: [testng] 02:37:14,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:37:14,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,499 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-06_02-37-14.log] [testng] 02:37:14,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dd36a1f - End of configuration. [testng] [2024-05-06 02:37:14,601] [pool-1-thread-6] Initializing /data/cris/house.tif: [testng] 02:37:14,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:37:14,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-06_02-37-14.log] [testng] 02:37:14,603 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b405f - End of configuration. [testng] [2024-05-06 02:37:14,689] [pool-1-thread-5] Initializing /data/ascb/423.psd: [testng] 02:37:14,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:37:14,689 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,690 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-06_02-37-14.log] [testng] 02:37:14,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@651d62dd - End of configuration. [testng] [2024-05-06 02:37:14,763] [pool-1-thread-4] Initializing /data/simon/colour_separated_image.psd: [testng] 02:37:14,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:37:14,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-06_02-37-14.log] [testng] 02:37:14,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45d4a291 - End of configuration. [testng] [2024-05-06 02:37:14,822] [pool-1-thread-3] Initializing /data/misc/glossy_buttons.psd: [testng] 02:37:14,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:37:14,822 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-06_02-37-14.log] [testng] 02:37:14,824 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3edf1167 - End of configuration. [testng] [2024-05-06 02:37:14,833] [pool-1-thread-2] Initializing /data/misc/glossy_orbs.psd: [testng] 02:37:14,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:37:14,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:37:14,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-06_02-37-14.log] [testng] 02:37:14,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5418318b - End of configuration. [testng] [2024-05-06 02:37:16,984] [pool-1-thread-6] Initializing /data/qa-4117/caspase gel-1.psd: [testng] [2024-05-06 02:37:16,998] [pool-1-thread-2] Initializing /data/misc/venus_composite.psd: [testng] [2024-05-06 02:37:17,014] [pool-1-thread-4] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] [2024-05-06 02:37:17,268] [pool-1-thread-3] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] [2024-05-06 02:37:17,295] [pool-1-thread-9] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] [2024-05-06 02:37:17,369] [pool-1-thread-10] Initializing /data/big-images/8kx8k.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 28 seconds Finished: SUCCESS