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Started by upstream project "BIOFORMATS-test-repo" build number 56
originally caused by:
 Started by upstream project "Trigger" build number 63
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins245062468998684260.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_8299_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:22:15,781 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:22:15,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:22:15,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:22:15,911 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:22:15,917 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:22:15,917 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:22:15,918 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:22:15,918 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:22:15,918 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 02:22:15,919 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 02:22:15,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 448 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-07 02:22:15,928] [main] java.version = 11.0.16
   [testng] 02:22:15,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:22:15,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:22:16,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-07_02-22-16.log]
   [testng] 02:22:16,125 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-05-07 02:22:16,127] [main] testng.directory = /data
   [testng] [2024-05-07 02:22:16,127] [main] testng.configDirectory = /config
   [testng] [2024-05-07 02:22:16,137] [main] testng.multiplier = 1.0
   [testng] [2024-05-07 02:22:16,138] [main] testng.in-memory = false
   [testng] [2024-05-07 02:22:16,139] [main] testng.allow-missing = false
   [testng] [2024-05-07 02:22:16,139] [main] user.language = en
   [testng] [2024-05-07 02:22:16,139] [main] user.country = ${user.country}
   [testng] [2024-05-07 02:22:16,139] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-05-07 02:26:30,378] [main] ----------------------------------------
   [testng] [2024-05-07 02:26:30,379] [main] Total files: 2169
   [testng] [2024-05-07 02:26:30,379] [main] Scan time: 254.239 s (117 ms/file)
   [testng] [2024-05-07 02:26:30,379] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-07 02:57:53,703] [pool-1-thread-1] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 02:57:53,703 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:57:53,704 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:57:53,705 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-07_02-57-53.log]
   [testng] 02:57:53,706 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f511c8d - End of configuration.
   [testng] [2024-05-07 02:58:40,311] [pool-1-thread-12] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 02:58:40,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:58:40,312 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:58:40,314 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-07_02-58-40.log]
   [testng] 02:58:40,314 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c104e4a - End of configuration.
   [testng] [2024-05-07 02:58:40,574] [pool-1-thread-11] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 02:58:40,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:58:40,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:58:40,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-07_02-58-40.log]
   [testng] 02:58:40,576 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17622459 - End of configuration.
   [testng] [2024-05-07 03:00:07,655] [pool-1-thread-10] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 03:00:07,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 03:00:07,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:07,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-07_03-00-07.log]
   [testng] 03:00:07,657 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7775835e - End of configuration.
   [testng] [2024-05-07 03:00:12,757] [pool-1-thread-9] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 03:00:12,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 03:00:12,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:00:12,758 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-07_03-00-12.log]
   [testng] 03:00:12,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dc9afdf - End of configuration.
   [testng] [2024-05-07 03:04:20,269] [pool-1-thread-8] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] 03:04:20,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 03:04:20,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:04:20,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-07_03-04-20.log]
   [testng] 03:04:20,271 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11af7bda - End of configuration.
   [testng] [2024-05-07 03:07:46,137] [pool-1-thread-7] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] 03:07:46,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 03:07:46,138 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:07:46,139 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-07_03-07-46.log]
   [testng] 03:07:46,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e2c244 - End of configuration.
   [testng] [2024-05-07 03:07:46,547] [pool-1-thread-6] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 03:07:46,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 03:07:46,548 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:07:46,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-07_03-07-46.log]
   [testng] 03:07:46,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64d8d3 - End of configuration.
   [testng] [2024-05-07 03:10:05,948] [pool-1-thread-5] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 03:10:05,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 03:10:05,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:10:05,949 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-07_03-10-05.log]
   [testng] 03:10:05,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@82423be - End of configuration.
   [testng] [2024-05-07 03:11:29,042] [pool-1-thread-4] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] 03:11:29,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 03:11:29,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:11:29,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-07_03-11-29.log]
   [testng] 03:11:29,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@93bb044 - End of configuration.
   [testng] [2024-05-07 03:11:39,972] [pool-1-thread-3] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 03:11:39,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 03:11:39,973 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:11:39,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-07_03-11-39.log]
   [testng] 03:11:39,974 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6461c61b - End of configuration.
   [testng] [2024-05-07 03:11:59,101] [pool-1-thread-2] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 03:11:59,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 03:11:59,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 03:11:59,102 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-07_03-11-59.log]
   [testng] 03:11:59,102 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a061fe0 - End of configuration.
   [testng] [2024-05-07 03:12:03,775] [pool-1-thread-12] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] [2024-05-07 03:12:46,594] [pool-1-thread-2] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] [2024-05-07 03:17:48,889] [pool-1-thread-7] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] [2024-05-07 03:20:54,207] [pool-1-thread-10] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] [2024-05-07 03:22:53,170] [pool-1-thread-4] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 65 minutes 15 seconds
Finished: SUCCESS