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Started by upstream project "BIOFORMATS-test-repo" build number 56 originally caused by: Started by upstream project "Trigger" build number 63 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins8420457188275501324.sh + '[' cellr = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8323_merge_ci -v /uod/idr/repos/curated/cellr:/data -v /uod/idr-scratch/merge-ci/curated/cellr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 02:46:17,681 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:46:17,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:46:17,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:46:17,906 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:46:17,940 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:46:17,940 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:46:17,940 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:46:17,941 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:46:17,941 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration. [testng] 02:46:17,942 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point [testng] 02:46:17,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 605 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-07 02:46:18,039] [main] java.version = 11.0.16 [testng] 02:46:18,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:46:18,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:46:18,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-07_02-46-18.log] [testng] 02:46:18,660 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration. [testng] [2024-05-07 02:46:18,662] [main] testng.directory = /data [testng] [2024-05-07 02:46:18,662] [main] testng.configDirectory = /config [testng] [2024-05-07 02:46:18,774] [main] testng.multiplier = 1.0 [testng] [2024-05-07 02:46:18,785] [main] testng.in-memory = false [testng] [2024-05-07 02:46:18,785] [main] testng.allow-missing = false [testng] [2024-05-07 02:46:18,785] [main] user.language = en [testng] [2024-05-07 02:46:18,785] [main] user.country = ${user.country} [testng] [2024-05-07 02:46:18,785] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-05-07 02:46:41,580] [main] ---------------------------------------- [testng] [2024-05-07 02:46:41,580] [main] Total files: 256 [testng] [2024-05-07 02:46:41,580] [main] Scan time: 22.795 s (89 ms/file) [testng] [2024-05-07 02:46:41,580] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 13 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-07 02:47:27,009] [pool-1-thread-1] Initializing /data/kees/Mariaelena_d.mtb: [testng] 02:47:27,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:47:27,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:27,012 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-07_02-47-27.log] [testng] 02:47:27,012 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f23f7e8 - End of configuration. [testng] [2024-05-07 02:47:27,409] [pool-1-thread-12] Initializing /data/viktorie/Structure.jpg: [testng] 02:47:27,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:47:27,409 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:27,410 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-07_02-47-27.log] [testng] 02:47:27,410 |-INFO in ch.qos.logback.core.sift.SiftProcessor@418bd941 - End of configuration. [testng] [2024-05-07 02:47:27,444] [pool-1-thread-11] Initializing /data/viktorie/090902/090902_d.mtb: [testng] 02:47:27,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:47:27,444 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:27,445 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-07_02-47-27.log] [testng] 02:47:27,445 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6270eb0c - End of configuration. [testng] [2024-05-07 02:47:27,470] [pool-1-thread-10] Initializing /data/qa-6659/12-07-05/12-07-05_d.mtb: [testng] 02:47:27,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:47:27,470 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:27,471 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-07_02-47-27.log] [testng] 02:47:27,471 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2668119e - End of configuration. [testng] [2024-05-07 02:47:29,100] [pool-1-thread-9] Initializing /data/qa-17107/LifeScienceDemo/LifeScienceDemoSTAR_d.mtb: [testng] 02:47:29,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:47:29,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-07_02-47-29.log] [testng] 02:47:29,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6465ded4 - End of configuration. [testng] [2024-05-07 02:47:29,117] [pool-1-thread-8] Initializing /data/colin/07-06-21/07-06-21_d.mtb: [testng] 02:47:29,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:47:29,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-07_02-47-29.log] [testng] 02:47:29,119 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20649e8b - End of configuration. [testng] [2024-05-07 02:47:29,244] [pool-1-thread-7] Initializing /data/viktorie/2Channels.tif: [testng] 02:47:29,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:47:29,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,245 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-07_02-47-29.log] [testng] 02:47:29,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3666c8d5 - End of configuration. [testng] [2024-05-07 02:47:29,291] [pool-1-thread-6] Initializing /data/qa-17107/plain/Plain_d.mtb: [testng] 02:47:29,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:47:29,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-07_02-47-29.log] [testng] 02:47:29,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@522c54ed - End of configuration. [testng] [2024-05-07 02:47:29,324] [pool-1-thread-5] Initializing /data/viktorie/test/test_d.mtb: [testng] 02:47:29,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:47:29,325 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,325 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-07_02-47-29.log] [testng] 02:47:29,326 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b4baa6e - End of configuration. [testng] [2024-05-07 02:47:29,354] [pool-1-thread-4] Initializing /data/clare/set_27_on_d.mtb: [testng] 02:47:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:47:29,354 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:29,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-07_02-47-29.log] [testng] 02:47:29,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@15b0956d - End of configuration. [testng] [2024-05-07 02:47:30,143] [pool-1-thread-3] Initializing /data/qa-17107/MaterialsDemo/MaterialsDemo_d.mtb: [testng] 02:47:30,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:47:30,143 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:30,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-07_02-47-30.log] [testng] 02:47:30,145 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7546cd20 - End of configuration. [testng] [2024-05-07 02:47:30,193] [pool-1-thread-2] Initializing /data/qa-17107/example2/example2_d.mtb: [testng] 02:47:30,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:47:30,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:47:30,194 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-07_02-47-30.log] [testng] 02:47:30,194 |-INFO in ch.qos.logback.core.sift.SiftProcessor@63bc1db - End of configuration. [testng] [2024-05-07 02:47:32,032] [pool-1-thread-5] Initializing /data/colin/08-10-09/08-10-09_d.mtb: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 689, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 2 seconds Finished: SUCCESS