Skip to content

Console Output

Started by upstream project "BIOFORMATS-test-repo" build number 6
originally caused by:
 Started by upstream project "Trigger" build number 9
 originally caused by:
  Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins5892711336573127298.sh
+ '[' pict = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_841_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 09:51:42,888 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 09:51:42,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 09:51:42,890 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:51:42,891 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 09:51:42,891 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 09:51:42,892 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 09:51:42,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 09:51:42,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:51:42,892 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 09:51:42,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 09:51:42,893 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 09:51:42,894 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 09:51:43,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 09:51:43,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 09:51:43,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 09:51:43,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 09:51:43,101 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 09:51:43,101 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 09:51:43,101 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 09:51:43,101 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 09:51:43,101 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 09:51:43,102 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 09:51:43,102 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 210 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-03-20 09:51:43,112] [main] java.version = 17.0.2
   [testng] 09:51:43,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 09:51:43,116 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:43,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_09-51-43.log]
   [testng] 09:51:43,160 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-03-20 09:51:43,162] [main] testng.directory = /data
   [testng] [2024-03-20 09:51:43,163] [main] testng.configDirectory = /config
   [testng] [2024-03-20 09:51:43,172] [main] testng.multiplier = 1.0
   [testng] [2024-03-20 09:51:43,173] [main] testng.in-memory = false
   [testng] [2024-03-20 09:51:43,173] [main] testng.allow-missing = false
   [testng] [2024-03-20 09:51:43,173] [main] user.language = en
   [testng] [2024-03-20 09:51:43,173] [main] user.country = ${user.country}
   [testng] [2024-03-20 09:51:43,173] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-03-20 09:51:43,534] [main] ----------------------------------------
   [testng] [2024-03-20 09:51:43,534] [main] Total files: 25
   [testng] [2024-03-20 09:51:43,534] [main] Scan time: 0.361 s (14 ms/file)
   [testng] [2024-03-20 09:51:43,534] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-03-20 09:51:46,114] [pool-1-thread-1] Initializing /data/wayne/PotatoMeristem.pict: 
   [testng] 09:51:46,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 09:51:46,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,117 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_09-51-46.log]
   [testng] 09:51:46,117 |-INFO in ch.qos.logback.core.sift.SiftProcessor@688fbd2c - End of configuration.
   [testng] [2024-03-20 09:51:46,181] [pool-1-thread-12] Initializing /data/misc/planet.pict: 
   [testng] 09:51:46,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 09:51:46,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,188 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_09-51-46.log]
   [testng] 09:51:46,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b62e28d - End of configuration.
   [testng] [2024-03-20 09:51:46,231] [pool-1-thread-11] Initializing /data/jqd/32bit.pict: 
   [testng] 09:51:46,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 09:51:46,232 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,233 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_09-51-46.log]
   [testng] 09:51:46,234 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fadf11 - End of configuration.
   [testng] [2024-03-20 09:51:46,286] [pool-1-thread-10] Initializing /data/brian/images/RED.PCT: 
   [testng] 09:51:46,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 09:51:46,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_09-51-46.log]
   [testng] 09:51:46,287 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53edc2c4 - End of configuration.
   [testng] [2024-03-20 09:51:46,317] [pool-1-thread-9] Initializing /data/misc/planet.png: 
   [testng] 09:51:46,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 09:51:46,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_09-51-46.log]
   [testng] 09:51:46,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aee2507 - End of configuration.
   [testng] [2024-03-20 09:51:46,327] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: 
   [testng] 09:51:46,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 09:51:46,328 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,329 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_09-51-46.log]
   [testng] 09:51:46,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4cb879d8 - End of configuration.
   [testng] [2024-03-20 09:51:46,348] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_RGB.pct: 
   [testng] 09:51:46,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 09:51:46,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_09-51-46.log]
   [testng] 09:51:46,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@eaea136 - End of configuration.
   [testng] [2024-03-20 09:51:46,395] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: 
   [testng] 09:51:46,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 09:51:46,395 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,397 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_09-51-46.log]
   [testng] 09:51:46,397 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ed2914 - End of configuration.
   [testng] [2024-03-20 09:51:46,415] [pool-1-thread-5] Initializing /data/brian/images/FLAG_RGB.pct: 
   [testng] 09:51:46,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 09:51:46,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,417 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_09-51-46.log]
   [testng] 09:51:46,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@753f39c1 - End of configuration.
   [testng] [2024-03-20 09:51:46,439] [pool-1-thread-4] Initializing /data/brian/images/MARBLES_B32.pct: 
   [testng] 09:51:46,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 09:51:46,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_09-51-46.log]
   [testng] 09:51:46,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration.
   [testng] [2024-03-20 09:51:46,629] [pool-1-thread-3] Initializing /data/brian/images/FLAG_B32.pct: 
   [testng] 09:51:46,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 09:51:46,629 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,630 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_09-51-46.log]
   [testng] 09:51:46,630 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a3bbdd5 - End of configuration.
   [testng] [2024-03-20 09:51:46,654] [pool-1-thread-2] Initializing /data/misc/planet2.pict: 
   [testng] 09:51:46,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 09:51:46,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 09:51:46,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_09-51-46.log]
   [testng] 09:51:46,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec4cef8 - End of configuration.
   [testng] [2024-03-20 09:51:48,644] [pool-1-thread-10] Initializing /data/jqd/sixteenBit.pict: 
   [testng] [2024-03-20 09:51:48,657] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: 
   [testng] [2024-03-20 09:51:48,674] [pool-1-thread-8] Initializing /data/brian/images/VENUS.pct: 
   [testng] [2024-03-20 09:51:48,703] [pool-1-thread-3] Initializing /data/brian/images/GRN.PCT: 
   [testng] [2024-03-20 09:51:48,724] [pool-1-thread-9] Initializing /data/brian/images/WHT.PCT: 
   [testng] [2024-03-20 09:51:48,769] [pool-1-thread-6] Initializing /data/brian/images/TRU256.PCT: 
   [testng] [2024-03-20 09:51:48,857] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_B24.PCT: 
   [testng] [2024-03-20 09:51:49,000] [pool-1-thread-12] Initializing /data/brian/images/FLAG_B24.PCT: 
   [testng] [2024-03-20 09:51:49,020] [pool-1-thread-2] Initializing /data/brian/images/BLU.PCT: 
   [testng] [2024-03-20 09:51:49,160] [pool-1-thread-1] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: 
   [testng] [2024-03-20 09:51:49,216] [pool-1-thread-7] Initializing /data/brian/images/BLK.PCT: 
   [testng] [2024-03-20 09:51:49,451] [pool-1-thread-4] Initializing /data/brian/images/YEL.PCT: 
   [testng] [2024-03-20 09:51:49,643] [pool-1-thread-10] Initializing /data/jqd/mire32.pict: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1325, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 10 seconds
Finished: SUCCESS