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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16643729307581206572.sh + '[' bmp = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8690_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:23:39,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:23:39,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:23:40,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:23:40,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:23:40,114 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:23:40,114 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:23:40,114 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:23:40,114 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:23:40,115 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:23:40,115 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:23:40,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 830 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:23:40,128] [main] java.version = 1.8.0_342 [testng] 01:23:40,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:23:40,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:40,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-23-40.log] [testng] 01:23:40,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:23:40,425] [main] testng.directory = /data [testng] [2024-05-10 01:23:40,426] [main] testng.configDirectory = /config [testng] [2024-05-10 01:23:40,540] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:23:40,541] [main] testng.in-memory = false [testng] [2024-05-10 01:23:40,541] [main] testng.allow-missing = false [testng] [2024-05-10 01:23:40,541] [main] user.language = en [testng] [2024-05-10 01:23:40,541] [main] user.country = ${user.country} [testng] [2024-05-10 01:23:40,541] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 01:23:41,465] [main] ---------------------------------------- [testng] [2024-05-10 01:23:41,466] [main] Total files: 31 [testng] [2024-05-10 01:23:41,466] [main] Scan time: 0.924 s (29 ms/file) [testng] [2024-05-10 01:23:41,466] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 31 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 01:23:43,334] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp: [testng] 01:23:43,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:23:43,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-23-43.log] [testng] 01:23:43,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77abbc79 - End of configuration. [testng] [2024-05-10 01:23:43,356] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp: [testng] 01:23:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:23:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-23-43.log] [testng] 01:23:43,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306bca0a - End of configuration. [testng] [2024-05-10 01:23:43,366] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp: [testng] 01:23:43,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:23:43,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-23-43.log] [testng] 01:23:43,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c088b5 - End of configuration. [testng] [2024-05-10 01:23:43,377] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp: [testng] 01:23:43,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:23:43,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-23-43.log] [testng] 01:23:43,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23755da5 - End of configuration. [testng] [2024-05-10 01:23:43,405] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp: [testng] 01:23:43,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:23:43,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-23-43.log] [testng] 01:23:43,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e851908 - End of configuration. [testng] [2024-05-10 01:23:43,414] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp: [testng] 01:23:43,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:23:43,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-23-43.log] [testng] 01:23:43,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration. [testng] [2024-05-10 01:23:43,423] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp: [testng] 01:23:43,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:23:43,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-23-43.log] [testng] 01:23:43,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b03cdd - End of configuration. [testng] [2024-05-10 01:23:43,431] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp: [testng] 01:23:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:23:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-23-43.log] [testng] 01:23:43,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d4b1c5 - End of configuration. [testng] [2024-05-10 01:23:43,445] [pool-1-thread-6] Initializing /data/curtis/image3.bmp: [testng] 01:23:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:23:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-23-43.log] [testng] 01:23:43,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dfb2b5 - End of configuration. [testng] [2024-05-10 01:23:43,461] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp: [testng] 01:23:43,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:23:43,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-23-43.log] [testng] 01:23:43,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12531d6a - End of configuration. [testng] [2024-05-10 01:23:43,480] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp: [testng] 01:23:43,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:23:43,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-23-43.log] [testng] 01:23:43,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a0bb90 - End of configuration. [testng] [2024-05-10 01:23:43,495] [pool-1-thread-2] Initializing /data/curtis/image5.bmp: [testng] 01:23:43,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:23:43,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:23:43,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-23-43.log] [testng] 01:23:43,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6f909d - End of configuration. [testng] [2024-05-10 01:23:45,798] [pool-1-thread-12] Initializing /data/curtis/image1.bmp: [testng] [2024-05-10 01:23:45,802] [pool-1-thread-3] Initializing /data/stephane/holo0908.bmp: [testng] [2024-05-10 01:23:45,811] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Eight.bmp: [testng] [2024-05-10 01:23:45,819] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Seven.bmp: [testng] [2024-05-10 01:23:45,827] [pool-1-thread-11] Initializing /data/curtis/image2.bmp: [testng] [2024-05-10 01:23:45,839] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Six.bmp: [testng] [2024-05-10 01:23:45,848] [pool-1-thread-2] Initializing /data/big-images/8kx8k-grey.bmp: [testng] [2024-05-10 01:23:45,860] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Three.bmp: [testng] [2024-05-10 01:23:45,869] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp: [testng] [2024-05-10 01:23:46,338] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff: [testng] [2024-05-10 01:23:46,368] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp: [testng] [2024-05-10 01:23:46,858] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Two.bmp: [testng] [2024-05-10 01:23:46,898] [pool-1-thread-6] Initializing /data/brian/images/raw_a_rg.bmp: [testng] [2024-05-10 01:23:46,994] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Four.bmp: [testng] [2024-05-10 01:23:46,999] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Nine.bmp: [testng] [2024-05-10 01:23:47,005] [pool-1-thread-8] Initializing /data/curtis/image4.bmp: [testng] [2024-05-10 01:23:47,127] [pool-1-thread-6] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp: [testng] [2024-05-10 01:23:47,216] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp: [testng] [2024-05-10 01:23:47,237] [pool-1-thread-11] Initializing /data/brian/images/kidney_TFl_1.bmp: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1643, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS