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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins12833772924384819579.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8692_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:24:13,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:24:13,151 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:24:13,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:24:13,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:24:13,203 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:24:13,203 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:24:13,203 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:24:13,204 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:24:13,204 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:24:13,205 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:24:13,205 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 494 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:24:13,234] [main] java.version = 1.8.0_342 [testng] 01:24:13,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:24:13,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:13,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-24-13.log] [testng] 01:24:13,406 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:24:13,421] [main] testng.directory = /data [testng] [2024-05-10 01:24:13,421] [main] testng.configDirectory = /config [testng] [2024-05-10 01:24:13,489] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:24:13,489] [main] testng.in-memory = false [testng] [2024-05-10 01:24:13,489] [main] testng.allow-missing = false [testng] [2024-05-10 01:24:13,489] [main] user.language = en [testng] [2024-05-10 01:24:13,489] [main] user.country = ${user.country} [testng] [2024-05-10 01:24:13,490] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 01:24:26,778] [main] ---------------------------------------- [testng] [2024-05-10 01:24:26,778] [main] Total files: 226 [testng] [2024-05-10 01:24:26,779] [main] Scan time: 13.288 s (58 ms/file) [testng] [2024-05-10 01:24:26,779] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 01:24:34,117] [pool-1-thread-1] Initializing /data/fluoview/Sample_XYT.TIF: [testng] 01:24:34,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:24:34,118 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-24-34.log] [testng] 01:24:34,120 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55234bc2 - End of configuration. [testng] [2024-05-10 01:24:34,221] [pool-1-thread-11] Initializing /data/iplab/3t3 Cell.IPL: [testng] 01:24:34,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:24:34,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,222 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-24-34.log] [testng] 01:24:34,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c7efd87 - End of configuration. [testng] [2024-05-10 01:24:34,236] [pool-1-thread-12] Initializing /data/iplab/Blend_Tritc.IPL: [testng] 01:24:34,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:24:34,237 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,238 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-24-34.log] [testng] 01:24:34,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e8e72bc - End of configuration. [testng] [2024-05-10 01:24:34,267] [pool-1-thread-9] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 01:24:34,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:24:34,267 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,268 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-24-34.log] [testng] 01:24:34,269 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23bfe909 - End of configuration. [testng] [2024-05-10 01:24:34,356] [pool-1-thread-10] Initializing /data/iplab/Color Image.IPL: [testng] 01:24:34,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:24:34,356 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,357 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-24-34.log] [testng] 01:24:34,357 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f37eaaa - End of configuration. [testng] [2024-05-10 01:24:34,396] [pool-1-thread-8] Initializing /data/fluoview/Sample_XT.tif: [testng] 01:24:34,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:24:34,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-24-34.log] [testng] 01:24:34,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39bcd7b3 - End of configuration. [testng] [2024-05-10 01:24:34,456] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 01:24:34,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:24:34,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-24-34.log] [testng] 01:24:34,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b683cd3 - End of configuration. [testng] [2024-05-10 01:24:34,506] [pool-1-thread-6] Initializing /data/iplab/Blend_Fitc.IPL: [testng] 01:24:34,506 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:24:34,507 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,508 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-24-34.log] [testng] 01:24:34,509 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7adc1fb8 - End of configuration. [testng] [2024-05-10 01:24:34,545] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 01:24:34,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:24:34,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-24-34.log] [testng] 01:24:34,549 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2211a711 - End of configuration. [testng] [2024-05-10 01:24:34,858] [pool-1-thread-4] Initializing /data/iplab/Actin.IPL: [testng] 01:24:34,858 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:24:34,859 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-24-34.log] [testng] 01:24:34,860 |-INFO in ch.qos.logback.core.sift.SiftProcessor@125510db - End of configuration. [testng] [2024-05-10 01:24:34,871] [pool-1-thread-3] Initializing /data/iplab/16Bit XRay.IPL: [testng] 01:24:34,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:24:34,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-24-34.log] [testng] 01:24:34,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42e829aa - End of configuration. [testng] [2024-05-10 01:24:34,879] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 01:24:34,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:24:34,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:24:34,880 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-24-34.log] [testng] 01:24:34,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3453107a - End of configuration. [testng] [2024-05-10 01:24:37,238] [pool-1-thread-4] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2024-05-10 01:24:37,289] [pool-1-thread-10] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] [2024-05-10 01:24:37,355] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2024-05-10 01:24:37,377] [pool-1-thread-12] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] [2024-05-10 01:24:37,386] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] [2024-05-10 01:24:37,442] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2024-05-10 01:24:37,586] [pool-1-thread-9] Initializing /data/iplab/Chromosomes.IPL: [testng] [2024-05-10 01:24:37,593] [pool-1-thread-2] Initializing /data/iplab/Color Histology.IPL: [testng] [2024-05-10 01:24:37,599] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2024-05-10 01:24:37,614] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL: [testng] [2024-05-10 01:24:37,632] [pool-1-thread-8] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2024-05-10 01:24:38,037] [pool-1-thread-2] Initializing /data/iplab/Blend_Dapi.IPL: [testng] [2024-05-10 01:24:38,044] [pool-1-thread-9] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] [2024-05-10 01:24:38,090] [pool-1-thread-7] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [2024-05-10 01:24:38,178] [pool-1-thread-8] Initializing /data/iplab/Blend_DIC.IPL: [testng] [2024-05-10 01:24:38,185] [pool-1-thread-1] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 33 seconds Finished: SUCCESS