![[Jenkins]](/jenkins/static/90204047/images/svgs/logo.svg){kind=logo}
Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7947860901082854021.sh + '[' samples = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8695_merge_ci -v /uod/idr/repos/curated/samples:/data -v /uod/idr-scratch/merge-ci/curated/samples:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:25:05,876 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:25:05,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:25:05,878 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:05,879 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:25:05,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:25:05,879 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:25:05,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:25:05,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:05,880 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:25:05,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:25:05,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:25:05,881 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:25:06,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:25:06,140 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:25:06,171 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:25:06,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:25:06,180 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:25:06,180 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:25:06,180 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:25:06,181 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:25:06,181 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:25:06,182 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:25:06,182 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 302 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:25:06,192] [main] java.version = 1.8.0_342 [testng] 01:25:06,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:25:06,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:06,249 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-25-06.log] [testng] 01:25:06,250 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:25:06,252] [main] testng.directory = /data [testng] [2024-05-10 01:25:06,253] [main] testng.configDirectory = /config [testng] [2024-05-10 01:25:06,267] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:25:06,267] [main] testng.in-memory = false [testng] [2024-05-10 01:25:06,267] [main] testng.allow-missing = false [testng] [2024-05-10 01:25:06,267] [main] user.language = en [testng] [2024-05-10 01:25:06,268] [main] user.country = ${user.country} [testng] [2024-05-10 01:25:06,268] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 01:25:28,766] [main] ---------------------------------------- [testng] [2024-05-10 01:25:28,766] [main] Total files: 164 [testng] [2024-05-10 01:25:28,766] [main] Scan time: 22.498 s (137 ms/file) [testng] [2024-05-10 01:25:28,766] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 59 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 01:25:39,820] [pool-1-thread-1] Initializing /data/ome/nfat10x3 good2_D12_w3.TIF: [testng] 01:25:39,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:25:39,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:39,822 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-25-39.log] [testng] 01:25:39,823 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78fdb086 - End of configuration. [testng] [2024-05-10 01:25:39,884] [pool-1-thread-12] Initializing /data/openjpeg/Cevennes1.bmp: [testng] 01:25:39,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:25:39,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:39,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-25-39.log] [testng] 01:25:39,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44c43a70 - End of configuration. [testng] [2024-05-10 01:25:39,909] [pool-1-thread-11] Initializing /data/ome/arwen0205_raw00201.pic: [testng] 01:25:39,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:25:39,909 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:39,910 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-25-39.log] [testng] 01:25:39,911 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c1d4195 - End of configuration. [testng] [2024-05-10 01:25:39,963] [pool-1-thread-10] Initializing /data/ome/anusgfpzs.lsm: [testng] 01:25:39,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:25:39,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:39,964 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-25-39.log] [testng] 01:25:39,965 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7371e854 - End of configuration. [testng] [2024-05-10 01:25:40,005] [pool-1-thread-9] Initializing /data/openjpeg/Rome.jp2: [testng] 01:25:40,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:25:40,005 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,006 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-25-40.log] [testng] 01:25:40,006 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f41e170 - End of configuration. [testng] [2024-05-10 01:25:40,033] [pool-1-thread-8] Initializing /data/openjpeg/Bretagne1.j2k: [testng] 01:25:40,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:25:40,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-25-40.log] [testng] 01:25:40,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fff58a - End of configuration. [testng] [2024-05-10 01:25:40,089] [pool-1-thread-7] Initializing /data/ome/nfat10x3 good2_D12_w1.TIF: [testng] 01:25:40,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:25:40,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-25-40.log] [testng] 01:25:40,091 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d20ef99 - End of configuration. [testng] [2024-05-10 01:25:40,131] [pool-1-thread-6] Initializing /data/openjpeg/thumb_Bretagne1.jpg: [testng] 01:25:40,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:25:40,131 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,132 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-25-40.log] [testng] 01:25:40,133 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c4d8d94 - End of configuration. [testng] [2024-05-10 01:25:40,141] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes2.jp2: [testng] 01:25:40,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:25:40,141 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,142 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-25-40.log] [testng] 01:25:40,142 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d8af582 - End of configuration. [testng] [2024-05-10 01:25:40,153] [pool-1-thread-4] Initializing /data/ome/C1lowmusgfp.lsm: [testng] 01:25:40,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:25:40,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,154 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-25-40.log] [testng] 01:25:40,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f500bf4 - End of configuration. [testng] [2024-05-10 01:25:40,221] [pool-1-thread-3] Initializing /data/ome/C1.lsm: [testng] 01:25:40,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:25:40,222 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,223 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-25-40.log] [testng] 01:25:40,223 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20352a06 - End of configuration. [testng] [2024-05-10 01:25:40,262] [pool-1-thread-2] Initializing /data/openjpeg/Bretagne2.ppm: [testng] 01:25:40,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:25:40,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:25:40,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-25-40.log] [testng] 01:25:40,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ad795a7 - End of configuration. [testng] [2024-05-10 01:25:42,492] [pool-1-thread-6] Initializing /data/openjpeg/thumb_facade.jpg: [testng] [2024-05-10 01:25:42,501] [pool-1-thread-4] Initializing /data/ome/tiffany.color.tiff: [testng] [2024-05-10 01:25:42,546] [pool-1-thread-3] Initializing /data/ome/654Atemp.stk: [testng] [2024-05-10 01:25:42,677] [pool-1-thread-10] Initializing /data/ome/tinyTest.d3d.dv: [testng] [2024-05-10 01:25:42,686] [pool-1-thread-7] Initializing /data/openjpeg/thumb_FacadeCOMP.jpg: [testng] [2024-05-10 01:25:42,699] [pool-1-thread-1] Initializing /data/ome/cb_1.r3d: [testng] [2024-05-10 01:25:43,048] [pool-1-thread-10] Initializing /data/ome/embryo.lsm: [testng] [2024-05-10 01:25:43,088] [pool-1-thread-2] Initializing /data/ome/t0_pos1-0_5x.lsm: [testng] [2024-05-10 01:25:43,193] [pool-1-thread-6] Initializing /data/ome/Adultmidsection.lsm: [testng] [2024-05-10 01:25:43,289] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes2.ppm: [testng] [2024-05-10 01:25:43,389] [pool-1-thread-5] Initializing /data/openjpeg/thumb_Cevennes1.jpg: [testng] [2024-05-10 01:25:43,398] [pool-1-thread-11] Initializing /data/openjpeg/thumb_Rome.jpg: [testng] [2024-05-10 01:25:43,584] [pool-1-thread-11] Initializing /data/sdub/sdub.pattern: [testng] [2024-05-10 01:25:43,784] [pool-1-thread-7] Initializing /data/openjpeg/Cevennes1.ppm: [testng] [2024-05-10 01:25:43,824] [pool-1-thread-5] Initializing /data/ome/worm.tiff: [testng] [2024-05-10 01:25:44,070] [pool-1-thread-4] Initializing /data/openjpeg/Facade.bmp: [testng] [2024-05-10 01:25:44,079] [pool-1-thread-1] Initializing /data/openjpeg/Rome.bmp: [testng] [2024-05-10 01:25:44,163] [pool-1-thread-8] Initializing /data/kidney_TFl/kidney_TFl.pattern: [testng] [2024-05-10 01:25:44,218] [pool-1-thread-10] Initializing /data/openjpeg/Bretagne2.bmp: [testng] [2024-05-10 01:25:44,316] [pool-1-thread-6] Initializing /data/openjpeg/Bretagne1.bmp: [testng] [2024-05-10 01:25:44,573] [pool-1-thread-3] Initializing /data/mouse-kidney/mouse-kidney.lif: [testng] [2024-05-10 01:25:44,725] [pool-1-thread-1] Initializing /data/openjpeg/Cevennes2.bmp: [testng] [2024-05-10 01:25:44,798] [pool-1-thread-12] Initializing /data/openjpeg/thumb_Cevennes2.jpg: [testng] [2024-05-10 01:25:44,823] [pool-1-thread-6] Initializing /data/openjpeg/FacadeERROPJ.bmp: [testng] [2024-05-10 01:25:44,955] [pool-1-thread-9] Initializing /data/ome/EXPERIMENT38_w1FITC_t1.STK: [testng] [2024-05-10 01:25:45,012] [pool-1-thread-2] Initializing /data/ome/011B1_Morph.HTD: [testng] [2024-05-10 01:25:45,895] [pool-1-thread-12] Initializing /data/ome/n2_plate18_P24_w1.tif: [testng] [2024-05-10 01:25:45,988] [pool-1-thread-8] Initializing /data/openjpeg/Rome.ppm: [testng] [2024-05-10 01:25:46,461] [pool-1-thread-1] Initializing /data/ome/PA-SDS-RFP-CenB_w1GFP_t1.stk: [testng] [2024-05-10 01:25:46,593] [pool-1-thread-3] Initializing /data/ome/PA-tub-wtmcakthurs-5_w1GFP_t1.STK: [testng] [2024-05-10 01:25:46,748] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Bretagne2.jpg: [testng] [2024-05-10 01:25:46,769] [pool-1-thread-9] Initializing /data/ome/210502-0min-NFKB-4.r3d: [testng] [2024-05-10 01:25:46,795] [pool-1-thread-11] Initializing /data/ome/compressed2ChZ.lsm: [testng] [2024-05-10 01:25:46,845] [pool-1-thread-8] Initializing /data/TAABA/TAABA.pattern: [testng] [2024-05-10 01:25:48,267] [pool-1-thread-7] Initializing /data/ome/Cpharynxzs1.lsm: [testng] [2024-05-10 01:25:48,512] [pool-1-thread-12] Initializing /data/openjpeg/Bretagne2.j2k: [testng] [2024-05-10 01:25:48,821] [pool-1-thread-11] Initializing /data/openjpeg/Facade.pnm: [testng] [2024-05-10 01:25:48,879] [pool-1-thread-1] Initializing /data/openjpeg/Bretagne1.ppm: [testng] [2024-05-10 01:25:48,895] [pool-1-thread-7] Initializing /data/ome/Cmidmusgfp1.lsm: [testng] [2024-05-10 01:25:48,919] [pool-1-thread-5] Initializing /data/openjpeg/Cevennes1.j2k: [testng] [2024-05-10 01:25:49,156] [pool-1-thread-9] Initializing /data/openjpeg/FacadeERROPJW.bmp: [testng] [2024-05-10 01:25:49,259] [pool-1-thread-1] Initializing /data/ome/nfat10x3 good2_D12_w2.TIF: [testng] [2024-05-10 01:25:49,381] [pool-1-thread-7] Initializing /data/openjpeg/thumb_Speedway.jpg: [testng] [2024-05-10 01:25:49,417] [pool-1-thread-4] Initializing /data/10-31 E1/10-31 E1.tif: [testng] [2024-05-10 01:25:49,693] [pool-1-thread-10] Initializing /data/ome/C1midmusnorm.lsm: [testng] [2024-05-10 01:25:49,786] [pool-1-thread-7] Initializing /data/ome/CHOBI_d3d.dv: [testng] [2024-05-10 01:25:49,957] [pool-1-thread-1] Initializing /data/ome/t1_pos1-0_5x.lsm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 3127, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 26 seconds Finished: SUCCESS