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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins15167875260219942588.sh + '[' targa = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8703_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:27:34,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:27:34,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:27:34,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:27:34,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:27:34,783 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:27:34,783 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:27:34,783 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:27:34,784 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:27:34,784 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:27:34,785 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:27:34,785 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 444 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:27:34,797] [main] java.version = 1.8.0_342 [testng] 01:27:34,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:27:34,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:34,862 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-27-34.log] [testng] 01:27:34,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:27:34,867] [main] testng.directory = /data [testng] [2024-05-10 01:27:34,867] [main] testng.configDirectory = /config [testng] [2024-05-10 01:27:34,881] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:27:34,881] [main] testng.in-memory = false [testng] [2024-05-10 01:27:34,881] [main] testng.allow-missing = false [testng] [2024-05-10 01:27:34,881] [main] user.language = en [testng] [2024-05-10 01:27:34,881] [main] user.country = ${user.country} [testng] [2024-05-10 01:27:34,881] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 01:27:35,304] [main] ---------------------------------------- [testng] [2024-05-10 01:27:35,304] [main] Total files: 21 [testng] [2024-05-10 01:27:35,305] [main] Scan time: 0.423 s (20 ms/file) [testng] [2024-05-10 01:27:35,305] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 01:27:36,844] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 01:27:36,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:27:36,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-27-36.log] [testng] 01:27:36,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1be5579a - End of configuration. [testng] [2024-05-10 01:27:36,867] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 01:27:36,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:27:36,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-27-36.log] [testng] 01:27:36,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@628228e1 - End of configuration. [testng] [2024-05-10 01:27:36,922] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 01:27:36,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:27:36,923 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-27-36.log] [testng] 01:27:36,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26e3a647 - End of configuration. [testng] [2024-05-10 01:27:36,937] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 01:27:36,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:27:36,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,940 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-27-36.log] [testng] 01:27:36,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72bd6fa6 - End of configuration. [testng] [2024-05-10 01:27:36,955] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 01:27:36,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:27:36,956 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-27-36.log] [testng] 01:27:36,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@331fe4f4 - End of configuration. [testng] [2024-05-10 01:27:36,971] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 01:27:36,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:27:36,972 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,973 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-27-36.log] [testng] 01:27:36,973 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516592f8 - End of configuration. [testng] [2024-05-10 01:27:36,986] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 01:27:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:27:36,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-27-36.log] [testng] 01:27:36,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e651225 - End of configuration. [testng] [2024-05-10 01:27:36,997] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 01:27:36,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:27:36,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:36,998 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-27-36.log] [testng] 01:27:36,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f323388 - End of configuration. [testng] [2024-05-10 01:27:37,007] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 01:27:37,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:27:37,007 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:37,008 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-27-37.log] [testng] 01:27:37,009 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b3bd04 - End of configuration. [testng] [2024-05-10 01:27:37,017] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 01:27:37,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:27:37,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:37,017 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-27-37.log] [testng] 01:27:37,018 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6322042a - End of configuration. [testng] [2024-05-10 01:27:37,026] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 01:27:37,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:27:37,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:37,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-27-37.log] [testng] 01:27:37,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d95d70 - End of configuration. [testng] [2024-05-10 01:27:37,037] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 01:27:37,037 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:27:37,038 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:27:37,038 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-27-37.log] [testng] 01:27:37,039 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3238418f - End of configuration. [testng] [2024-05-10 01:27:38,999] [pool-1-thread-9] Initializing /data/samples/XING_B32.TGA: [testng] [2024-05-10 01:27:39,029] [pool-1-thread-12] Initializing /data/samples/MARBLES.TGA: [testng] [2024-05-10 01:27:39,052] [pool-1-thread-6] Initializing /data/samples/CCM8.TGA: [testng] [2024-05-10 01:27:39,071] [pool-1-thread-8] Initializing /data/samples/XING_T16.TGA: [testng] [2024-05-10 01:27:39,105] [pool-1-thread-2] Initializing /data/samples/UTC32.TGA: [testng] [2024-05-10 01:27:39,126] [pool-1-thread-1] Initializing /data/samples/XING_B16.TGA: [testng] [2024-05-10 01:27:39,138] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] [2024-05-10 01:27:39,147] [pool-1-thread-3] Initializing /data/samples/UTC24.TGA: [testng] [2024-05-10 01:27:39,168] [pool-1-thread-7] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 11 seconds Finished: SUCCESS