Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins14303214406742639606.sh + '[' pict = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8716_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:30:53,963 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:30:54,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:30:54,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:30:54,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:30:54,082 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:30:54,082 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:30:54,082 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:30:54,083 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:30:54,083 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 01:30:54,084 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 01:30:54,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 568 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 01:30:54,095] [main] java.version = 1.8.0_342 [testng] 01:30:54,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:30:54,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:54,243 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-30-54.log] [testng] 01:30:54,245 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 01:30:54,248] [main] testng.directory = /data [testng] [2024-05-10 01:30:54,248] [main] testng.configDirectory = /config [testng] [2024-05-10 01:30:54,324] [main] testng.multiplier = 1.0 [testng] [2024-05-10 01:30:54,325] [main] testng.in-memory = false [testng] [2024-05-10 01:30:54,325] [main] testng.allow-missing = false [testng] [2024-05-10 01:30:54,325] [main] user.language = en [testng] [2024-05-10 01:30:54,325] [main] user.country = ${user.country} [testng] [2024-05-10 01:30:54,325] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 01:30:55,091] [main] ---------------------------------------- [testng] [2024-05-10 01:30:55,091] [main] Total files: 25 [testng] [2024-05-10 01:30:55,092] [main] Scan time: 0.766 s (30 ms/file) [testng] [2024-05-10 01:30:55,092] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 01:30:56,770] [pool-1-thread-2] Initializing /data/brian/images/RED.PCT: [testng] 01:30:56,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:30:56,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,772 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-30-56.log] [testng] 01:30:56,772 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a7f2f3b - End of configuration. [testng] [2024-05-10 01:30:56,795] [pool-1-thread-12] Initializing /data/brian/images/TRU256.PCT: [testng] 01:30:56,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:30:56,795 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,796 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-30-56.log] [testng] 01:30:56,796 |-INFO in ch.qos.logback.core.sift.SiftProcessor@454507c4 - End of configuration. [testng] [2024-05-10 01:30:56,807] [pool-1-thread-11] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] 01:30:56,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:30:56,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,809 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-30-56.log] [testng] 01:30:56,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a4f5bba - End of configuration. [testng] [2024-05-10 01:30:56,818] [pool-1-thread-10] Initializing /data/brian/images/FLAG_B32.pct: [testng] 01:30:56,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:30:56,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-30-56.log] [testng] 01:30:56,819 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67137a57 - End of configuration. [testng] [2024-05-10 01:30:56,831] [pool-1-thread-9] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 01:30:56,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:30:56,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-30-56.log] [testng] 01:30:56,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fe5826 - End of configuration. [testng] [2024-05-10 01:30:56,969] [pool-1-thread-8] Initializing /data/jqd/sixteenBit.pict: [testng] 01:30:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:30:56,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-30-56.log] [testng] 01:30:56,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33526587 - End of configuration. [testng] [2024-05-10 01:30:56,980] [pool-1-thread-7] Initializing /data/jqd/mire32.pict: [testng] 01:30:56,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:30:56,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,981 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-30-56.log] [testng] 01:30:56,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20874e48 - End of configuration. [testng] [2024-05-10 01:30:56,994] [pool-1-thread-6] Initializing /data/jqd/mireSixteen.pict: [testng] 01:30:56,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:30:56,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:56,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-30-56.log] [testng] 01:30:56,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7571cc91 - End of configuration. [testng] [2024-05-10 01:30:57,003] [pool-1-thread-5] Initializing /data/wayne/PotatoMeristem.pict: [testng] 01:30:57,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:30:57,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-30-57.log] [testng] 01:30:57,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14fdfdb1 - End of configuration. [testng] [2024-05-10 01:30:57,057] [pool-1-thread-4] Initializing /data/brian/images/BLK.PCT: [testng] 01:30:57,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:30:57,057 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-30-57.log] [testng] 01:30:57,058 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e91038d - End of configuration. [testng] [2024-05-10 01:30:57,077] [pool-1-thread-3] Initializing /data/brian/images/YEL.PCT: [testng] 01:30:57,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:30:57,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,078 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-30-57.log] [testng] 01:30:57,079 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3207e1ac - End of configuration. [testng] [2024-05-10 01:30:57,097] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] 01:30:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:30:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:30:57,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-30-57.log] [testng] 01:30:57,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22cbb6ac - End of configuration. [testng] [2024-05-10 01:30:58,384] [pool-1-thread-6] Initializing /data/jqd/32bit.pict: [testng] [2024-05-10 01:30:58,412] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] [2024-05-10 01:30:58,441] [pool-1-thread-10] Initializing /data/brian/images/VENUS.pct: [testng] [2024-05-10 01:30:58,466] [pool-1-thread-7] Initializing /data/misc/planet.png: [testng] [2024-05-10 01:30:58,470] [pool-1-thread-12] Initializing /data/misc/swlogo.pict: [testng] [2024-05-10 01:30:58,617] [pool-1-thread-8] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2024-05-10 01:30:58,669] [pool-1-thread-2] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2024-05-10 01:30:58,684] [pool-1-thread-1] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2024-05-10 01:30:58,766] [pool-1-thread-3] Initializing /data/misc/planet.pict: [testng] [2024-05-10 01:30:58,786] [pool-1-thread-4] Initializing /data/misc/planet2.pict: [testng] [2024-05-10 01:30:58,853] [pool-1-thread-5] Initializing /data/brian/images/GRN.PCT: [testng] [2024-05-10 01:30:58,869] [pool-1-thread-7] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] [2024-05-10 01:30:59,184] [pool-1-thread-12] Initializing /data/brian/images/WHT.PCT: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 12 seconds Finished: SUCCESS