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Started by upstream project "BIOFORMATS-test-repo" build number 6 originally caused by: Started by upstream project "Trigger" build number 9 originally caused by: Started by user devspace Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins10111336138447948789.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_875_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 10:23:59,501 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 10:23:59,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service. [testng] 10:23:59,503 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:23:59,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:23:59,504 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:23:59,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:23:59,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:23:59,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:23:59,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:23:59,507 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:23:59,507 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:23:59,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:23:59,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:23:59,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:23:59,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:23:59,776 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:23:59,784 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:23:59,784 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:23:59,784 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:23:59,785 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:23:59,785 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration. [testng] 10:23:59,786 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point [testng] 10:23:59,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 280 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-20 10:23:59,800] [main] java.version = 17.0.2 [testng] 10:23:59,804 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:23:59,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:23:59,855 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_10-23-59.log] [testng] 10:23:59,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration. [testng] [2024-03-20 10:23:59,858] [main] testng.directory = /data [testng] [2024-03-20 10:23:59,859] [main] testng.configDirectory = /config [testng] [2024-03-20 10:23:59,868] [main] testng.multiplier = 1.0 [testng] [2024-03-20 10:23:59,869] [main] testng.in-memory = false [testng] [2024-03-20 10:23:59,869] [main] testng.allow-missing = false [testng] [2024-03-20 10:23:59,869] [main] user.language = en [testng] [2024-03-20 10:23:59,869] [main] user.country = ${user.country} [testng] [2024-03-20 10:23:59,869] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2024-03-20 10:32:53,604] [main] ---------------------------------------- [testng] [2024-03-20 10:32:53,605] [main] Total files: 7329 [testng] [2024-03-20 10:32:53,605] [main] Scan time: 533.735 s (72 ms/file) [testng] [2024-03-20 10:32:53,605] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-20 10:37:25,401] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 10:37:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:37:25,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:25,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-20_10-37-25.log] [testng] 10:37:25,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13fea6a - End of configuration. [testng] [2024-03-20 10:37:25,493] [pool-1-thread-12] Initializing /data/qa-16915/m-04-488.tif: [testng] 10:37:25,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:37:25,493 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:25,494 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-20_10-37-25.log] [testng] 10:37:25,495 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39ad48fa - End of configuration. [testng] [2024-03-20 10:37:25,831] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] 10:37:25,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:37:25,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:25,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-20_10-37-25.log] [testng] 10:37:25,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6cb42a60 - End of configuration. [testng] [2024-03-20 10:37:25,932] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-20 10:37:25,934] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] 10:37:25,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:37:25,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:25,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-20_10-37-25.log] [testng] 10:37:25,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d90038a - End of configuration. [testng] [2024-03-20 10:37:26,025] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] 10:37:26,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:37:26,025 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-20_10-37-26.log] [testng] 10:37:26,026 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7479e8d8 - End of configuration. [testng] [2024-03-20 10:37:26,127] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] 10:37:26,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:37:26,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-20_10-37-26.log] [testng] 10:37:26,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385fc257 - End of configuration. [testng] [2024-03-20 10:37:26,295] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] 10:37:26,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:37:26,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,296 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-20_10-37-26.log] [testng] 10:37:26,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61640b88 - End of configuration. [testng] [2024-03-20 10:37:26,394] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-20 10:37:26,397] [pool-1-thread-6] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] 10:37:26,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:37:26,397 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-20_10-37-26.log] [testng] 10:37:26,399 |-INFO in ch.qos.logback.core.sift.SiftProcessor@99c0c00 - End of configuration. [testng] [2024-03-20 10:37:26,538] [pool-1-thread-5] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 10:37:26,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:37:26,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-20_10-37-26.log] [testng] 10:37:26,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68ad020c - End of configuration. [testng] [2024-03-20 10:37:26,641] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] 10:37:26,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:37:26,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-20_10-37-26.log] [testng] 10:37:26,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59e4d03 - End of configuration. [testng] [2024-03-20 10:37:26,700] [pool-1-thread-3] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] 10:37:26,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:37:26,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:26,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-20_10-37-26.log] [testng] 10:37:26,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79f3ee87 - End of configuration. [testng] [2024-03-20 10:37:27,552] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 10:37:27,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:37:27,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:37:27,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-20_10-37-27.log] [testng] 10:37:27,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@399e8bdd - End of configuration. [testng] [2024-03-20 10:37:29,665] [pool-1-thread-5] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-20 10:37:29,876] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-20 10:37:30,062] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-20 10:37:30,945] [pool-1-thread-12] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-20 10:37:31,764] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-20 10:37:31,989] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2024-03-20 10:37:32,348] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-20 10:37:32,801] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-20 10:37:32,961] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-20 10:37:33,310] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-20 10:37:33,567] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-20 10:37:33,892] [pool-1-thread-6] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-20 10:37:34,600] [pool-1-thread-9] Initializing /data/jacek/YFP2trans.tif: [testng] [2024-03-20 10:37:35,255] [pool-1-thread-10] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-20 10:37:36,381] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-20 10:37:38,073] [pool-1-thread-9] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-20 10:37:38,313] [pool-1-thread-5] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-20 10:37:39,149] [pool-1-thread-1] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-20 10:37:39,481] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-20 10:37:39,791] [pool-1-thread-10] Initializing /data/qa-16887/m-01.tif: [testng] [2024-03-20 10:37:40,233] [pool-1-thread-11] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-20 10:37:40,408] [pool-1-thread-7] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-20 10:37:40,625] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-20 10:37:40,734] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-20 10:37:41,397] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-20 10:37:42,195] [pool-1-thread-9] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-20 10:37:43,084] [pool-1-thread-11] Initializing /data/josh/2101to800.stk: [testng] [2024-03-20 10:37:43,861] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2024-03-20 10:37:44,175] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-20 10:37:46,061] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-20 10:37:46,449] [pool-1-thread-10] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-20 10:37:46,776] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:37:46,908] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-20 10:37:47,061] [pool-1-thread-6] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-20 10:37:47,268] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-20 10:37:47,713] [pool-1-thread-4] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-20 10:37:47,927] [pool-1-thread-10] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:37:48,357] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-20 10:37:50,041] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-20 10:37:53,832] [pool-1-thread-3] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-20 10:37:54,131] [pool-1-thread-5] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2024-03-20 10:37:55,095] [pool-1-thread-7] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-03-20 10:37:55,556] [pool-1-thread-8] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-20 10:37:57,479] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-20 10:37:58,011] [pool-1-thread-4] Used files list does not include base file [testng] [2024-03-20 10:37:58,025] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-20 10:37:59,366] [pool-1-thread-11] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2024-03-20 10:37:59,581] [pool-1-thread-1] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-20 10:37:59,739] [pool-1-thread-1] Used files list does not include base file [testng] [2024-03-20 10:37:59,756] [pool-1-thread-10] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-20 10:37:59,957] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-20 10:38:01,300] [pool-1-thread-11] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-20 10:38:01,578] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-20 10:38:02,454] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2024-03-20 10:38:14,597] [pool-1-thread-1] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-20 10:38:16,966] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-20 10:38:17,641] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-20 10:38:18,009] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] [2024-03-20 10:38:19,476] [pool-1-thread-12] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-20 10:38:21,047] [pool-1-thread-10] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-20 10:38:21,357] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-20 10:38:23,284] [pool-1-thread-10] Initializing /data/heiko/sample_3x3.stk: [testng] [2024-03-20 10:38:23,887] [pool-1-thread-9] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-20 10:38:24,634] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-20 10:38:24,959] [pool-1-thread-4] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-20 10:38:27,769] [pool-1-thread-4] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-20 10:38:28,258] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2024-03-20 10:38:28,485] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-20 10:38:29,027] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-20 10:38:30,813] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-20 10:38:31,192] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-20 10:38:31,490] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-20 10:38:31,491] [pool-1-thread-9] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2024-03-20 10:38:31,803] [pool-1-thread-4] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-20 10:38:32,159] [pool-1-thread-6] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-20 10:38:36,428] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2024-03-20 10:38:36,576] [pool-1-thread-4] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-20 10:38:37,010] [pool-1-thread-8] Initializing 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[testng] [2024-03-20 10:38:43,189] [pool-1-thread-5] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-20 10:38:43,495] [pool-1-thread-10] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-20 10:38:43,848] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-20 10:38:44,577] [pool-1-thread-5] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-20 10:38:44,977] [pool-1-thread-4] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-20 10:38:45,502] [pool-1-thread-7] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-20 10:38:45,676] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-20 10:38:45,959] [pool-1-thread-2] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-20 10:38:49,977] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-20 10:38:50,268] [pool-1-thread-10] Used files list does not include base file [testng] [2024-03-20 10:38:50,922] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-20 10:38:50,986] [pool-1-thread-12] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-20 10:38:51,917] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:38:52,723] [pool-1-thread-7] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-20 10:38:53,298] [pool-1-thread-8] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-20 10:38:54,234] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-20 10:38:54,889] [pool-1-thread-5] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-20 10:38:56,309] [pool-1-thread-8] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2024-03-20 10:38:56,956] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-20 10:38:57,462] [pool-1-thread-7] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-20 10:38:57,616] [pool-1-thread-11] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-20 10:38:57,817] [pool-1-thread-9] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-20 10:38:58,167] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:38:58,930] [pool-1-thread-8] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-20 10:39:00,170] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] [2024-03-20 10:39:00,397] [pool-1-thread-7] Initializing /data/samples/zseries.stk: [testng] [2024-03-20 10:39:02,002] [pool-1-thread-12] Initializing 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/data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-20 10:39:21,968] [pool-1-thread-9] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-20 10:39:22,822] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-20 10:39:23,236] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:39:24,046] [pool-1-thread-1] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-20 10:39:24,431] [pool-1-thread-7] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-20 10:39:28,245] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2024-03-20 10:39:29,620] [pool-1-thread-11] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-20 10:39:30,287] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-20 10:39:30,887] [pool-1-thread-7] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-20 10:39:32,064] [pool-1-thread-1] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-20 10:39:32,386] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-20 10:39:32,900] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-20 10:39:33,489] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-20 10:39:33,836] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-20 10:39:34,729] [pool-1-thread-6] Initializing /data/josh/2101to600e.stk: [testng] [2024-03-20 10:39:36,826] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-20 10:39:38,344] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-20 10:39:38,712] [pool-1-thread-9] Initializing /data/dave/Z Series.stk: [testng] [2024-03-20 10:39:39,742] [pool-1-thread-12] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2024-03-20 10:39:40,562] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-20 10:39:40,899] [pool-1-thread-3] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-20 10:39:41,414] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:39:42,272] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-20 10:39:42,938] [pool-1-thread-7] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-20 10:39:44,444] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-20 10:39:45,179] [pool-1-thread-11] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-20 10:39:46,667] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-20 10:39:47,125] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-20 10:39:47,367] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-20 10:39:48,297] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-20 10:39:50,438] [pool-1-thread-1] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-20 10:39:51,055] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2024-03-20 10:39:51,570] [pool-1-thread-6] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-20 10:39:52,832] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-20 10:39:54,182] [pool-1-thread-1] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-20 10:39:55,592] [pool-1-thread-3] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-20 10:39:55,735] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-20 10:39:56,434] [pool-1-thread-3] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-20 10:39:59,163] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-20 10:40:00,436] [pool-1-thread-6] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-20 10:40:02,580] [pool-1-thread-9] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-20 10:40:03,185] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-20 10:40:05,222] [pool-1-thread-2] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-20 10:40:06,576] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-20 10:40:07,144] [pool-1-thread-1] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2024-03-20 10:40:08,691] [pool-1-thread-2] Initializing /data/grant/X.STK: [testng] [2024-03-20 10:40:11,619] [pool-1-thread-7] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-20 10:40:12,719] [pool-1-thread-6] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-20 10:40:14,991] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s1t11_w1Laser4054BD4BP.tif: [testng] [2024-03-20 10:40:16,357] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-20 10:40:17,066] [pool-1-thread-6] Used files list does not include base file [testng] [2024-03-20 10:40:20,701] [pool-1-thread-2] Initializing /data/thomas/test.tif: [testng] [2024-03-20 10:40:21,325] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-20 10:40:23,819] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-20 10:40:24,518] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:40:25,383] [pool-1-thread-9] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-20 10:40:25,961] [pool-1-thread-3] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-20 10:40:28,364] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-20 10:40:28,771] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-20 10:40:29,716] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-20 10:40:30,684] [pool-1-thread-2] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-20 10:40:34,405] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-20 10:40:34,818] [pool-1-thread-7] Used files list does not include base file [testng] [2024-03-20 10:40:35,582] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-20 10:40:36,157] [pool-1-thread-11] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2024-03-20 10:40:38,876] [pool-1-thread-6] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-20 10:40:40,025] [pool-1-thread-1] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-20 10:40:40,648] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-20 10:40:41,222] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-20 10:40:41,238] [pool-1-thread-7] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-20 10:40:44,539] [pool-1-thread-1] Initializing /data/grant/XYZ_Image.STK: [testng] [2024-03-20 10:40:45,200] [pool-1-thread-3] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-20 10:40:48,326] [pool-1-thread-6] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-20 10:40:48,783] [pool-1-thread-11] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-20 10:40:49,189] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-20 10:40:52,321] [pool-1-thread-11] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-20 10:40:53,945] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-20 10:40:54,387] [pool-1-thread-9] Initializing /data/jerome/deconv.STK: [testng] [2024-03-20 10:40:55,764] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-20 10:41:00,215] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-20 10:41:00,849] [pool-1-thread-8] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2024-03-20 10:41:19,547] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] 11:42:39,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 11:42:39,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:42:39,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-20_11-42-39.log] [testng] 11:42:39,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72d10fac - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 78 minutes 43 seconds Finished: SUCCESS