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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4779452790646323297.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8799_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:34:21,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:34:21,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:34:21,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:34:21,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:34:21,662 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:34:21,662 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:34:21,662 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:34:21,662 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:34:21,662 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:34:21,663 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:34:21,663 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 1010 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 02:34:21,730] [main] java.version = 1.8.0_342 [testng] 02:34:21,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:34:21,735 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:22,151 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-34-22.log] [testng] 02:34:22,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 02:34:22,172] [main] testng.directory = /data [testng] [2024-05-10 02:34:22,172] [main] testng.configDirectory = /config [testng] [2024-05-10 02:34:22,363] [main] testng.multiplier = 1.0 [testng] [2024-05-10 02:34:22,363] [main] testng.in-memory = false [testng] [2024-05-10 02:34:22,363] [main] testng.allow-missing = false [testng] [2024-05-10 02:34:22,363] [main] user.language = en [testng] [2024-05-10 02:34:22,364] [main] user.country = ${user.country} [testng] [2024-05-10 02:34:22,364] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:34:23,961] [main] ---------------------------------------- [testng] [2024-05-10 02:34:23,961] [main] Total files: 32 [testng] [2024-05-10 02:34:23,961] [main] Scan time: 1.597 s (49 ms/file) [testng] [2024-05-10 02:34:23,961] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:34:27,596] [pool-1-thread-1] Initializing /data/keith/PF020328saur v3.1sc: [testng] 02:34:27,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:34:27,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,597 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-34-27.log] [testng] 02:34:27,598 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5af9276c - End of configuration. [testng] [2024-05-10 02:34:27,615] [pool-1-thread-12] Initializing /data/geert/good example1.1sc.jpg: [testng] 02:34:27,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:34:27,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,616 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-34-27.log] [testng] 02:34:27,617 |-INFO in ch.qos.logback.core.sift.SiftProcessor@70739a89 - End of configuration. [testng] [2024-05-10 02:34:27,632] [pool-1-thread-11] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] 02:34:27,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:34:27,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,633 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-34-27.log] [testng] 02:34:27,633 |-INFO in ch.qos.logback.core.sift.SiftProcessor@565cb8a7 - End of configuration. [testng] [2024-05-10 02:34:27,679] [pool-1-thread-10] Initializing /data/geert/good example1.1sc: [testng] 02:34:27,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:34:27,679 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-34-27.log] [testng] 02:34:27,680 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c3d5aa2 - End of configuration. [testng] [2024-05-10 02:34:27,740] [pool-1-thread-9] Initializing /data/qa-29469/bad3.1sc: [testng] 02:34:27,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:34:27,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-34-27.log] [testng] 02:34:27,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e7503d - End of configuration. [testng] [2024-05-10 02:34:27,774] [pool-1-thread-8] Initializing /data/david/Opened in imageJ.tiff: [testng] 02:34:27,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:34:27,774 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-34-27.log] [testng] 02:34:27,775 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2c4594 - End of configuration. [testng] [2024-05-10 02:34:27,806] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] 02:34:27,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:34:27,806 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,807 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-34-27.log] [testng] 02:34:27,808 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57fa1044 - End of configuration. [testng] [2024-05-10 02:34:27,859] [pool-1-thread-6] Initializing /data/qa-16880/c-src v7.1sc: [testng] 02:34:27,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:34:27,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-34-27.log] [testng] 02:34:27,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64becd6a - End of configuration. [testng] [2024-05-10 02:34:27,877] [pool-1-thread-5] Initializing /data/keith/test2.1sc: [testng] 02:34:27,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:34:27,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-34-27.log] [testng] 02:34:27,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@83f68c1 - End of configuration. [testng] [2024-05-10 02:34:27,898] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 02:34:27,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:34:27,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-34-27.log] [testng] 02:34:27,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4600a652 - End of configuration. [testng] [2024-05-10 02:34:27,925] [pool-1-thread-3] Initializing /data/keith/pg020410saur3.1sc: [testng] 02:34:27,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:34:27,925 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,926 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-34-27.log] [testng] 02:34:27,927 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5231f30b - End of configuration. [testng] [2024-05-10 02:34:27,945] [pool-1-thread-2] Initializing /data/keith/test.1sc: [testng] 02:34:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:34:27,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:34:27,946 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-34-27.log] [testng] 02:34:27,947 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d5d3780 - End of configuration. [testng] [2024-05-10 02:34:30,054] [pool-1-thread-6] Initializing /data/adrian/test_img.1sc: [testng] [2024-05-10 02:34:30,080] [pool-1-thread-2] Initializing /data/samples/Criterion.1sc: [testng] [2024-05-10 02:34:30,105] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2024-05-10 02:34:30,149] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] [2024-05-10 02:34:30,169] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2024-05-10 02:34:30,195] [pool-1-thread-8] Initializing /data/qa-29459/bad.1sc: [testng] [2024-05-10 02:34:30,230] [pool-1-thread-9] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] [2024-05-10 02:34:30,261] [pool-1-thread-12] Initializing /data/geert/bad example1.1sc: [testng] [2024-05-10 02:34:30,395] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] [2024-05-10 02:34:30,446] [pool-1-thread-11] Initializing /data/qa-29459/bad.jpg: [testng] [2024-05-10 02:34:30,601] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2024-05-10 02:34:30,973] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg: [testng] [2024-05-10 02:34:31,151] [pool-1-thread-9] Initializing /data/samples/imagesEight.1sc: [testng] [2024-05-10 02:34:31,258] [pool-1-thread-11] Initializing /data/qa-29469/bad2.1sc: [testng] [2024-05-10 02:34:31,605] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2024-05-10 02:34:31,716] [pool-1-thread-3] Initializing /data/geert/bad example1.1sc.jpg: [testng] [2024-05-10 02:34:31,797] [pool-1-thread-9] Initializing /data/qa-29469/good.1sc: [testng] [2024-05-10 02:34:31,975] [pool-1-thread-4] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2024-05-10 02:34:32,114] [pool-1-thread-2] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] [2024-05-10 02:34:32,174] [pool-1-thread-1] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 21 seconds Finished: SUCCESS