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Started by upstream project "BIOFORMATS-test-repo" build number 59 originally caused by: Started by upstream project "Trigger" build number 66 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins4349424068574148270.sh + '[' obf = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_8817_merge_ci -v /uod/idr/repos/curated/obf:/data -v /uod/idr-scratch/merge-ci/curated/obf:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 02:50:27,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:50:27,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:50:27,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:50:27,205 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:50:27,214 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:50:27,214 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:50:27,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:50:27,214 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:50:27,214 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration. [testng] 02:50:27,215 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point [testng] 02:50:27,215 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 433 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-05-10 02:50:27,226] [main] java.version = 1.8.0_342 [testng] 02:50:27,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:50:27,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:27,277 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-50-27.log] [testng] 02:50:27,279 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-05-10 02:50:27,281] [main] testng.directory = /data [testng] [2024-05-10 02:50:27,281] [main] testng.configDirectory = /config [testng] [2024-05-10 02:50:27,294] [main] testng.multiplier = 1.0 [testng] [2024-05-10 02:50:27,295] [main] testng.in-memory = false [testng] [2024-05-10 02:50:27,295] [main] testng.allow-missing = false [testng] [2024-05-10 02:50:27,295] [main] user.language = en [testng] [2024-05-10 02:50:27,295] [main] user.country = ${user.country} [testng] [2024-05-10 02:50:27,295] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-05-10 02:50:29,130] [main] ---------------------------------------- [testng] [2024-05-10 02:50:29,130] [main] Total files: 12 [testng] [2024-05-10 02:50:29,131] [main] Scan time: 1.835 s (152 ms/file) [testng] [2024-05-10 02:50:29,131] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 11 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-05-10 02:50:34,182] [pool-1-thread-1] Initializing /data/qa-17111/before 1.msr: [testng] 02:50:34,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:50:34,183 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:34,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-50-34.log] [testng] 02:50:34,184 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6074b676 - End of configuration. [testng] [2024-05-10 02:50:35,045] [pool-1-thread-11] Initializing /data/qa-27923/test.obf: [testng] 02:50:35,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:50:35,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:35,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-50-35.log] [testng] 02:50:35,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7848a4aa - End of configuration. [testng] [2024-05-10 02:50:35,107] [pool-1-thread-10] Initializing /data/public/ngladitz/v6/test-v6-short-write.obf: [testng] 02:50:35,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:50:35,107 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:35,108 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-50-35.log] [testng] 02:50:35,109 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57ec064d - End of configuration. [testng] [2024-05-10 02:50:35,191] [pool-1-thread-9] Initializing /data/public/ngladitz/v6/test-v6.obf: [testng] 02:50:35,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:50:35,191 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:35,192 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-50-35.log] [testng] 02:50:35,193 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59055076 - End of configuration. [testng] [2024-05-10 02:50:35,588] [pool-1-thread-8] Initializing /data/public/ngladitz/v6/test-v6-uncompressed.obf: [testng] 02:50:35,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:50:35,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:35,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-50-35.log] [testng] 02:50:35,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2802ad6d - End of configuration. [testng] [2024-05-10 02:50:36,167] [pool-1-thread-7] Initializing /data/public/ngladitz/v4/test-v4-uncompressed.obf: [testng] 02:50:36,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:50:36,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,168 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-50-36.log] [testng] 02:50:36,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43269f7b - End of configuration. [testng] [2024-05-10 02:50:36,415] [pool-1-thread-6] Initializing /data/tristan/Example_Chrimson_Beads_40nm.msr: [testng] 02:50:36,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:50:36,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-50-36.log] [testng] 02:50:36,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11372728 - End of configuration. [testng] [2024-05-10 02:50:36,454] [pool-1-thread-5] Initializing /data/public/ngladitz/v4/test-v4.obf: [testng] 02:50:36,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:50:36,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-50-36.log] [testng] 02:50:36,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bae9daf - End of configuration. [testng] [2024-05-10 02:50:36,604] [pool-1-thread-4] Initializing /data/qa-16895/Measurement1.msr: [testng] 02:50:36,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:50:36,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-50-36.log] [testng] 02:50:36,605 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35cd2ba7 - End of configuration. [testng] [2024-05-10 02:50:36,663] [pool-1-thread-3] Initializing /data/bjoernthiel/20191106__zstack.msr: [testng] 02:50:36,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:50:36,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,665 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-50-36.log] [testng] 02:50:36,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58b335e0 - End of configuration. [testng] [2024-05-10 02:50:36,796] [pool-1-thread-2] Initializing /data/zoltan/3D-CONFOCAL-PSF-235nm.msr: [testng] 02:50:36,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:50:36,796 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:50:36,797 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-50-36.log] [testng] 02:50:36,797 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57a97120 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 583, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 45 seconds Finished: SUCCESS